Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120291.Seq
(864 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80690.1 68414.m09468 expressed protein 30 1.7
At4g14103.1 68417.m02177 F-box family protein contains F-box dom... 29 4.0
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 29 4.0
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 29 4.0
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 29 4.0
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 29 5.3
At3g13370.1 68416.m01682 hypothetical protein 28 9.2
At2g38820.2 68415.m04769 expressed protein contains Pfam profile... 28 9.2
At1g60340.1 68414.m06794 apical meristem formation protein-relat... 28 9.2
>At1g80690.1 68414.m09468 expressed protein
Length = 227
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 785 ILGVEFVGPLSVCASMP-VTDLVLLASKVLRTDKMCHTCSSACVRVTTNP 639
++G +GPL V A+M + D +S L T H C C+++T NP
Sbjct: 80 LIGKTDLGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNP 129
>At4g14103.1 68417.m02177 F-box family protein contains F-box domain
Pfam:PF00646
Length = 381
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 659 HKQSCKCGTFCLCAKPLK 712
HK + +CG CLC KP K
Sbjct: 359 HKATYRCGDVCLCKKPRK 376
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 663 LCARYHKSQRRSVLV-VCK*ISIKAGARMQLITYAPRVPF-KDGVIDLRLIFIGDCFRIR 490
+C R HKS+RR +L+ + I+ G ++ + F KDG R I +GDC +
Sbjct: 5 VCERRHKSRRRHMLISSSRVIATVEGGGSSCLSLSSSTSFSKDG----RKISVGDCALFK 60
Query: 489 SP 484
P
Sbjct: 61 PP 62
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 663 LCARYHKSQRRSVLV-VCK*ISIKAGARMQLITYAPRVPF-KDGVIDLRLIFIGDCFRIR 490
+C R HKS+RR +L+ + I+ G ++ + F KDG R I +GDC +
Sbjct: 5 VCERRHKSRRRHMLISSSRVIATVEGGGSSCLSLSSSTSFSKDG----RKISVGDCALFK 60
Query: 489 SP 484
P
Sbjct: 61 PP 62
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 663 LCARYHKSQRRSVLV-VCK*ISIKAGARMQLITYAPRVPF-KDGVIDLRLIFIGDCFRIR 490
+C R HKS+RR +L+ + I+ G ++ + F KDG R I +GDC +
Sbjct: 5 VCERRHKSRRRHMLISSSRVIATVEGGGSSCLSLSSSTSFSKDG----RKISVGDCALFK 60
Query: 489 SP 484
P
Sbjct: 61 PP 62
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 127 LHPAWDCYNNSNSRW 171
L AWDCY ++N RW
Sbjct: 423 LSTAWDCYMDANDRW 437
>At3g13370.1 68416.m01682 hypothetical protein
Length = 188
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 295 HDREQPNDYDAN*FNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTP 134
HD P N Y SAP+P + S + Y + K + +D +N P+P
Sbjct: 107 HDAPLPPKVPMNIIYGDYKSAPSPPKVSMNIIYGSY--KSRHDDSGRGHNAPSP 158
>At2g38820.2 68415.m04769 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 310
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 773 EFVGPLSVCASMPVTDLVLLASKVLRTDKMCHTCSSACVRVTTNPNGAVYLLY 615
E + L +C S+ V +L+ +K+ T K C +C++ NG V L Y
Sbjct: 122 EILKSLVLCKSIRVRNLLTDVTKIAETSKNCKLKDGSCLKSVA--NGLVSLGY 172
>At1g60340.1 68414.m06794 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 371
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 624 VHCAVGICGNAHTSRAASVAHFVCAQNL*SQKHKVRYGHASAHGQRTDKFYAKDLMIMSG 803
V C + + A S + + +++L + YG+ S + Q D+FY K +M G
Sbjct: 142 VICKIRLLFEAEISFLLAKHFYTTSESLLRHELLPSYGYLS-NTQEEDEFYLKTIMTSEG 200
Query: 804 NVSMHFINNLQKC 842
N ++ N C
Sbjct: 201 NDWPSYVTNNVYC 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,430
Number of Sequences: 28952
Number of extensions: 348294
Number of successful extensions: 939
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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