Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120290.Seq
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    30   0.47 
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    29   1.1  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   4.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   5.8  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    26   7.6  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.6  

>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 223 LGLIFSRC*G-FLDLRRFGHCYCP 155
           LG+ F +  G F  ++RFGH YCP
Sbjct: 97  LGIAFKQAMGNFAGVKRFGHAYCP 120


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 187 PKSPSNEKRSALNPRSYSKNLLQDLGVLSATNTQTTIKIEPILQ*RNLQRLYPRRQMLKS 366
           P+SPS  K + L  R  +  + Q  GVL ATN  T  K+   L+ RN      + +M+ S
Sbjct: 244 PQSPSFSKSNFLFARDLTNWVFQRKGVLQATN-MTYGKVAEPLESRNASCYRIKDEMIFS 302

Query: 367 L 369
           +
Sbjct: 303 I 303


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 356 C*SRYNDNDRQWSHVYRSHRCTEQE 430
           C SRYND+ +Q+S +     C  QE
Sbjct: 454 CESRYNDDTKQFSKIKSWKACMPQE 478


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 519 SPINLVLNSKRASAWSPVVFRQRRLPNPST 608
           +PI   LN    S+  P +F +R +P P T
Sbjct: 610 TPIPSSLNVSLESSKKPEIFHERHIPTPET 639


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 201 QREKISPKPEKLFEESAARFRSIIGDEHTDDNQN 302
           Q+E++  K   +  ESAA   ++ G+E  +D+ N
Sbjct: 487 QQEEVREKSRGVQGESAAHLENVDGEEGIEDSSN 520


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 186 SKKP*QREKISPKPEKLFEESAARFRSIIGDEHTD 290
           ++ P     +S  PE  F+ES A+ + +I +E  D
Sbjct: 62  TEPPKDTRAVSALPENFFDESIAKNKELIEEEWND 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,387
Number of Sequences: 5004
Number of extensions: 60825
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)