Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120290.Seq
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    33   0.37 
05_06_0059 - 25264704-25266032                                         32   0.65 
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253...    30   2.0  
06_03_1356 - 29536027-29537379                                         29   3.5  
10_07_0100 + 12861588-12862601                                         29   4.6  

>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 272  RRRTHRRQSK*NRSSSDETCRDCTHDD-RC*SRYNDNDRQWSHVYRSHRCTEQERL*ADI 448
            ++R+HRR+ + + S SD    D + DD    S   D+    SH +  HR +  +      
Sbjct: 1196 KKRSHRRKHRRHSSRSDSDASDYSSDDEERRSSKKDHSSSRSHRHHHHRSSGDDSGSESE 1255

Query: 449  DEPKSKRQEQSRSS 490
            +  +S+ ++  RSS
Sbjct: 1256 ERGRSRHKKHHRSS 1269


>05_06_0059 - 25264704-25266032
          Length = 442

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
 Frame = +2

Query: 272 RRRTHRRQSK*NRSSSDETCRDCTHDDRC*SRYNDN--DRQWSHVYRSHRCTEQERL*AD 445
           R R H  +S  +R   D   RD  H  R      D   DR+ S   RSH C E +R    
Sbjct: 108 RDRRHGGRSDRDREVFDRG-RDRRHGGRSDREELDRERDRRRSRSRRSH-CEELDR---- 161

Query: 446 IDEPKSKRQEQSRSSFV*LRKIPRKPDKSRPKFEKSVSMVAGSVP 580
            +  + +R+   R  F   RKIPR+         + +   AG+ P
Sbjct: 162 -ERDRRRRRSSDREVFDRARKIPRRRPHEAESEPRKIEAAAGAPP 205


>03_01_0325 +
           2529875-2529922,2530181-2530279,2530958-2531055,
           2531945-2532031,2532652-2532684,2532813-2532890,
           2533059-2533183,2533267-2533349,2533436-2533527,
           2533611-2533680,2533760-2533829,2533919-2534073
          Length = 345

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 764 YEFLFNSTLTFLRRFCRRIASLDRRSPNELFSRLGAYCPACIRAACSSFDKSCAW 600
           +E+LF+ST       C     L+     E+ S     CP C+R+AC   D S AW
Sbjct: 216 FEYLFDSTKDISALHCGHTIHLE--CLYEMRSHQQFSCPVCLRSAC---DMSHAW 265


>06_03_1356 - 29536027-29537379
          Length = 450

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 686 PNELFSRLGAYCPACIRAACSSFDKSCAWIWKA 588
           P E+ + L  + PA +R ACS F+   A IW++
Sbjct: 246 PREI-AGLRQHAPASVRGACSRFELVAACIWRS 277


>10_07_0100 + 12861588-12862601
          Length = 337

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 725 RFCRRIASLDRRSPNELFSRLGAYCPACIRAACSSF--DKSCAWIWKATLSEHYRRPC 558
           R CRR AS   R  + L S      P+  R ACS    + +C+    ++ S + RRPC
Sbjct: 156 RACRRPASPGARLASLLNSIFSGKRPSAQRPACSPDYPEPACSTAPPSSSSSYARRPC 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,216,861
Number of Sequences: 37544
Number of extensions: 393297
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)