Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120290.Seq
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)              31   1.5  
SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.2  
SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)                        29   6.2  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  

>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 347 DDRC*SRYNDNDRQWSHVYRSHRCTEQERL*ADIDEPKSKRQEQSRSSF 493
           DDR  SR  D DRQW   Y SH  T   R           R+ +S +SF
Sbjct: 174 DDRLWSR-GDEDRQWPRYYNSHALTHDGRYLNTEQTNPLPRRSKSLTSF 221


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 510 YQGSPINLVLNSKRASAWSPVVFRQRRLPNP 602
           Y G PI    N++  +A+S V+FR  R+PNP
Sbjct: 411 YTGIPICSQCNTRGHTAYSYVLFRDSRIPNP 441


>SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)
          Length = 279

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
 Frame = +2

Query: 365 RYNDNDRQWSHVYRSHRCTEQERL*ADIDEPKSKRQEQSRSSFV*LRKIP-RKPDKSRPK 541
           R   +  +W       R   Q    A  D+P  KRQ   R+      K P  +P   +P 
Sbjct: 11  RLKQSSAKWFEHSGKQRAKHQTTSKAPNDQPSIKRQSTKRAKHQTASKAPNNQPSIKQPA 70

Query: 542 FEKSVSMVAGSVPTAXXXXXXXXXXXXLNKLPVYMQGSKH 661
             ++ S V+ + P+              N  P   Q +KH
Sbjct: 71  KYQTTSQVSNNQPSIKLPAKYQTTSQVSNNQPSIKQPAKH 110


>SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 404 RSHRCTEQERL*ADIDE--PKSKRQ---EQSRSSFV*LRKIPRKPDKSRPKFE 547
           R HRCT  +RL  + ++  P S R     Q +++F+   K P  P  +RP  E
Sbjct: 157 RHHRCTSDDRLHREKEKRLPTSPRDTIPHQEKTNFI--EKYPISPKNTRPHLE 207


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 199 SNEKRSALNPRSYSKNLLQDLGVLSATNTQTTIKIEPILQ*RNLQRLYPRRQMLK 363
           +NE RS +    Y+++LLQ+L    + N +   + E  LQ +NL+  Y   Q  K
Sbjct: 283 ANESRSKV--AKYTRSLLQELETKLSNNERKLAETENQLQNKNLELEYEYEQKAK 335


>SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)
          Length = 400

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 498 SCEKYQGSPINLVLNSKRASAWSPVVFRQRRLPNP 602
           + E Y   P++ +L S   S   PV+F  RRL +P
Sbjct: 240 AAESYPAGPVSAILQSTVCSHRYPVIFDLRRLLSP 274


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 29/88 (32%), Positives = 40/88 (45%)
 Frame = +2

Query: 290 RQSK*NRSSSDETCRDCTHDDRC*SRYNDNDRQWSHVYRSHRCTEQERL*ADIDEPKSKR 469
           RQSK +RS S    +  +      SR N  D++ S   RSH    +ER       PKS+ 
Sbjct: 233 RQSKRSRSRSATLNQKRSRSKHSRSRSNSRDQKRSRSRRSHTPPSEER-------PKSRL 285

Query: 470 QEQSRSSFV*LRKIPRKPDKSRPKFEKS 553
              SRS     RK  + P +S P+ + S
Sbjct: 286 YRHSRSKSK-ERKTLKSPIRS-PRGQSS 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,091,531
Number of Sequences: 59808
Number of extensions: 487026
Number of successful extensions: 1452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)