Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120290.Seq
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63500.2 68416.m07153 expressed protein                             30   2.2  
At3g63500.1 68416.m07152 expressed protein                             30   2.2  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    28   6.7  

>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 719 CRRIASLDRRSPNELFSRLGAYCPACIRAACSSFD---KSCAWI 597
           CR +  +D      + SR   +C AC+   CS+FD    +C+W+
Sbjct: 812 CRVLLPVDE-CDCRVCSRKDGFCSACMCLVCSNFDMASNTCSWV 854


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 719 CRRIASLDRRSPNELFSRLGAYCPACIRAACSSFD---KSCAWI 597
           CR +  +D      + SR   +C AC+   CS+FD    +C+W+
Sbjct: 537 CRVLLPVDE-CDCRVCSRKDGFCSACMCLVCSNFDMASNTCSWV 579


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 659 AYCPACIRAACSSFDKSCAWIWKA 588
           A+CP+  +  CS  D SC  +W A
Sbjct: 288 AFCPSSAQEFCSVGDDSCLMLWDA 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,150
Number of Sequences: 28952
Number of extensions: 319520
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)