Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120289.Seq
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   2.6  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   2.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.0  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 132 NVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNEL 251
           N ++F    K L   L ++KN  + CF N+  +    N+L
Sbjct: 262 NSVLFQNVYKPLPIVLSIVKNCLSYCF-NLYHLASKSNQL 300


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 132 NVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNEL 251
           N ++F    K L   L ++KN  + CF N+  +    N+L
Sbjct: 262 NSVLFQNVYKPLPIVLSIVKNCLSYCF-NLYHLASKSNQL 300


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 375 SVDISLQTLHSYKTELSTNKFITLTVL 295
           S++I L   ++ K +L+TN+   LTVL
Sbjct: 139 SINIILSDPNTNKLKLNTNESYELTVL 165


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 350 NVCKEISTDERFLKPKECCE 409
           N C E + DE   +P  CC+
Sbjct: 87  NECPEPTCDEPVHRPGRCCK 106


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 499 LFIRCPARWTLCVRGGRFPHGNAARV 422
           LFI  P RW L      F  G+ A V
Sbjct: 693 LFINVPPRWILEPTDKAFAQGSDAAV 718


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 379 KIFKAKRMLRIRYMQRVLRYHVENGHHARKVSSVQ 483
           K FK ++   IR   +   + V+N + + K SS+Q
Sbjct: 234 KRFKDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQ 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,815
Number of Sequences: 336
Number of extensions: 4211
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)