Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120289.Seq
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 40 4e-04
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 32 0.10
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 31 0.13
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 31 0.18
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 29 0.71
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 29 0.94
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 29 0.94
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 28 1.2
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 1.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 2.9
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 3.8
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 5.0
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 5.0
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 6.6
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 6.6
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.8
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 8.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 8.8
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 8.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAKCPACRTSY 493
EC +C + + ER L K C C + +A C+ W ++ ++CP CR+S+
Sbjct: 1557 ECAICYSVLSVERTLPNKRCGTCRHKF-HASCLYKWFKSSNSSRCPLCRSSF 1607
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 341 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 484
Y+C +C + S + P C + CN C ++ T KCP CR
Sbjct: 204 YKCVICLD-SPENLSCTP---CGHIFCNFCILSALGTTAATQKCPVCR 247
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 347 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNEWR 523
C +C +EI ++ KP +C Y +C C + + + +CPACR Y +WR
Sbjct: 18 CPLCMEEIDISDKNFKPCQC-GYRVCRFCWHHIKEDL--NGRCPACRRLY--TEENVQWR 72
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 341 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCP 475
Y CNVC + T ++ EC ++ +C C + T H P
Sbjct: 6 YHCNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHP 50
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 570 LTSYFDLKDNEHVPSEPM--AFIRNYLNCTFDLLDDAVLM 683
++++ DL DN H+P + M I LN TFD D LM
Sbjct: 332 ISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLM 371
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 51 HHFIFDAQRIIQCIKEIEGAYG 116
HH+++D+QRII + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -3
Query: 444 HMVTQHALHIAYSQHSFGFKNLSSVDISLQTLHSYKTEL-----STNKFITLTVLLIVSS 280
H + H I Y F F + S I HS +++L S F+ ++VLL+++
Sbjct: 250 HQASIHLSQINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAVFSKKSFLIVSVLLLIAH 309
Query: 279 FSINNRQFVLTRSRTF 232
F+ F+L +R +
Sbjct: 310 FNTIFHPFILADNRHY 325
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +2
Query: 332 SVLYECNVCKEISTDERFLKPKEC-CEYAICNACCVTMWKTATTHAKCPACRTSYK*ARN 508
S LYECN C+EI + C C Y + CC + H C C T + A
Sbjct: 179 SNLYECNACREI-----VIAGYVCDCGYCLHVYCCKHL-----AHVNCINCNTPWANATV 228
Query: 509 QNEW 520
W
Sbjct: 229 IGRW 232
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 341 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNE 517
Y+ +C +S D + +P C I + C+ + T + +CP C T+Y+ A+ E
Sbjct: 21 YDKKLCS-LSNDS-WRRPCRCS--LIAHESCLISYITRSGSTRCPQCLTAYRIAKPPKE 75
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 545 FQSQQVAAATHFGCVLIYTMSC 480
FQ +A+A H GCV I+ +C
Sbjct: 295 FQKSIIASAAHDGCVSIWNTAC 316
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +3
Query: 393 QKNVANTLYATRAALPCGKRPPRTQSVQ 476
QKN+ + L++ + LPC + R ++++
Sbjct: 338 QKNIVDDLFSVKKPLPCSPKSKRVKTLE 365
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 387 KNLSSVDISLQTLHSYKTELSTNKFITLT 301
KNLS++ L+T +S+ ELS + ITL+
Sbjct: 303 KNLSTIQSPLKTSNSFFKELSPHSQITLS 331
>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 198
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +3
Query: 489 RINKHATKMSGGGNLLTLERD--HFKYLFLTSYFDLKD---NEHVPSEPMAFIRNYLNCT 653
++N+H K RD + Y+F +D K+ N H S P NYL T
Sbjct: 30 KVNEHVLKSEPFTKTYYFARDAKNPDYIFGLELYDSKEVLENSHKTSNPFLAFANYLTST 89
Query: 654 F-DLLDDAVLMNY 689
L + L+N+
Sbjct: 90 HAPLAEPLQLLNF 102
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 508 VACLFIRCPARWTLCVRGGRFPHGNAARVA 419
V C IR P+ + LC G+ H +A ++A
Sbjct: 337 VPCQLIRLPSDFVLCKMKGKKEHKDAFKIA 366
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 379 KIFKAKRMLRIRYMQRVLRYHV 444
K+F +L I+Y+ +VL YHV
Sbjct: 227 KVFNDLLLLAIQYVPKVLNYHV 248
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 308 VMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKC 472
++ F +NS + N+C+ S +F+ E+ +C C ++ + A + C
Sbjct: 3258 ILKPFFENSKFTKQNLCESASIIVQFITDLTVGEFQLCLKCLLSFSQHAASLRIC 3312
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 292 NSFQLFNKQQ--AICINSFTYICIEFIFLKQHAKEFLISFNASRNCFK 155
NSF L +++ +C C+ I L QH + LI + ++N F+
Sbjct: 286 NSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPLLICMSCNQNYFR 333
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/97 (23%), Positives = 44/97 (45%)
Frame = +3
Query: 393 QKNVANTLYATRAALPCGKRPPRTQSVQRAGHRINKHATKMSGGGNLLTLERDHFKYLFL 572
++ + N++Y R+ P P+ ++++ + + A + L + R++FK F
Sbjct: 145 KEKLLNSIYDVRSRDP---ESPKLITMEQ--ELVREEAACLVAEAQLTNITRENFKRAFT 199
Query: 573 TSYFDLKDNEHVPSEPMAFIRNYLNCTFDLLDDAVLM 683
L EH SE +A + Y DLLDD ++
Sbjct: 200 LHIGTLL--EH--SEKVAILCGYAKKILDLLDDTPIV 232
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 57 FIFDAQRIIQCIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQM 236
F + QRI+ I+ + GV GN YL + A K+ NSF C K+I + +
Sbjct: 170 FAGEQQRIVDEIEYLVD--GVTFSGNSSASR-YLSLIGIAEKMFDNSFRLCLKSIRDVFL 226
Query: 237 YVNELI 254
+ E I
Sbjct: 227 RIFEEI 232
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 280 LFNKQQAICINSFTYICIEFIFLKQHAKEFLISFNASRNC 161
L + I + F IC+ IF +++ I AS NC
Sbjct: 202 LHENSREIVLTDFGSICLVPIFASNNSEAIAIQDKASENC 241
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 338 LYECNVCKEISTDERFLK 391
+++CNV E+ D+RFL+
Sbjct: 865 VHDCNVISEVIPDQRFLR 882
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 612 SEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNI 749
SEPMAF+ +N + LL ++++ N ++ L+ L+ T T +
Sbjct: 127 SEPMAFMSENVNLQYALL-NSIIDKMNNNIKKPNLEFLMPCTITKL 171
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -2
Query: 403 TFFWL*KSFIRRYFFTNIAFVQNRIVYEQIHNFNSFINSFQ---LFNKQQAICINSFTYI 233
T F + K FF ++ R +E + + F SFQ NK Q C+ SF+ +
Sbjct: 542 TIFLISKYASSPSFFNEYPILKFRCDFENVRTMDRFYQSFQKALSMNKSQPSCL-SFSKL 600
Query: 232 CIEFIFLKQHAK 197
+F +++
Sbjct: 601 NDFVVFFNNYSR 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,107
Number of Sequences: 5004
Number of extensions: 66893
Number of successful extensions: 218
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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