Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120289.Seq
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 34 0.12
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 34 0.12
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 34 0.12
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 34 0.12
Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical pr... 33 0.22
U41026-2|AAM51523.1| 295|Caenorhabditis elegans Hypothetical pr... 33 0.29
U23511-12|AAC46798.2| 610|Caenorhabditis elegans Hypothetical p... 33 0.29
U46753-9|AAA85765.1| 226|Caenorhabditis elegans Hypothetical pr... 32 0.38
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 32 0.50
Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical pr... 31 0.66
U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical pr... 31 0.88
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical... 31 1.2
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 30 2.0
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z70782-2|CAA94839.1| 387|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF016677-5|AAB66143.1| 128|Caenorhabditis elegans Hypothetical ... 29 3.5
Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical pr... 29 4.7
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 29 4.7
Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z49125-6|CAA88937.2| 776|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 28 6.2
AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine re... 28 8.2
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 218 YKFYANVRER-VNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKP 394
+ Y N R++ +N + L+ + + + + T + L+ + +E +CK +E+ +K
Sbjct: 345 FYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYELYCEMGTTFE--LCKICDDNEKNIKI 402
Query: 395 KECCEYAICNACCVTMWKTATTHAK-CPACRTSYK 496
E C + +C A C+ W+ + CP CR K
Sbjct: 403 -EPCGHLLC-AKCLANWQDSDGGGNTCPFCRYEIK 435
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 218 YKFYANVRER-VNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKP 394
+ Y N R++ +N + L+ + + + + T + L+ + +E +CK +E+ +K
Sbjct: 345 FYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYELYCEMGTTFE--LCKICDDNEKNIKI 402
Query: 395 KECCEYAICNACCVTMWKTATTHAK-CPACRTSYK 496
E C + +C A C+ W+ + CP CR K
Sbjct: 403 -EPCGHLLC-AKCLANWQDSDGGGNTCPFCRYEIK 435
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 218 YKFYANVRER-VNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKP 394
+ Y N R++ +N + L+ + + + + T + L+ + +E +CK +E+ +K
Sbjct: 328 FYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYELYCEMGTTFE--LCKICDDNEKNIKI 385
Query: 395 KECCEYAICNACCVTMWKTATTHAK-CPACRTSYK 496
E C + +C A C+ W+ + CP CR K
Sbjct: 386 -EPCGHLLC-AKCLANWQDSDGGGNTCPFCRYEIK 418
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 218 YKFYANVRER-VNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKP 394
+ Y N R++ +N + L+ + + + + T + L+ + +E +CK +E+ +K
Sbjct: 328 FYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYELYCEMGTTFE--LCKICDDNEKNIKI 385
Query: 395 KECCEYAICNACCVTMWKTATTHAK-CPACRTSYK 496
E C + +C A C+ W+ + CP CR K
Sbjct: 386 -EPCGHLLC-AKCLANWQDSDGGGNTCPFCRYEIK 418
>Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical
protein T23F6.3 protein.
Length = 291
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAKCPACR 484
EC VC E D P+ C C I CV W ++T CP CR
Sbjct: 209 ECTVCFETPVD-----PQGCNRCMNVIGCKTCVQRWHRSSTQPSCPLCR 252
>U41026-2|AAM51523.1| 295|Caenorhabditis elegans Hypothetical
protein C28G1.6 protein.
Length = 295
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 335 VLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 484
+L C +C+E E + C + IC C +++ KCP CR
Sbjct: 2 ILPTCEICEESYRSESRIPKNLNCGHVICPVCASKLFE--NPEVKCPTCR 49
>U23511-12|AAC46798.2| 610|Caenorhabditis elegans Hypothetical
protein C32D5.10 protein.
Length = 610
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 487
EC+VCK D L +CC + C C V W T + CP C+T
Sbjct: 40 ECSVCKNEIIDTTSLS--DCC-HEFCYDCIVG-WLTKGSGPFCPMCKT 83
>U46753-9|AAA85765.1| 226|Caenorhabditis elegans Hypothetical
protein C34F11.1 protein.
Length = 226
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 496
EC +C E D R PK C + C C V W + CP CR +K
Sbjct: 154 ECTICFEKPVDPRGC-PK-CLKVIGCKKC-VKKWFDTSASKACPLCRFEWK 201
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 184 SFNASRNCFKYG*NTITLPRSRTPYAP 104
+FN R CFKY +I+ PRSR P+ P
Sbjct: 70 AFNRLRKCFKY--RSISPPRSRAPFPP 94
>Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical
protein T24D1.3 protein.
Length = 349
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNEWR 523
EC +C E+ L C + C C V +W +++ CP CR + AR + +
Sbjct: 273 ECTMCFEVPVSP--LGCNNCLQIIGCEEC-VDIWYRSSSKPSCPLCRRKW--ARKPDVSK 327
Query: 524 RQLVDSGKRS 553
++ K+S
Sbjct: 328 MSVISVRKQS 337
>Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical
protein C16C10.7 protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +2
Query: 326 DNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
D S +ECN+C + + D C + C C T + CP C+++
Sbjct: 19 DESARFECNICLDAAKD----AVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSA 69
>U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical
protein T13A10.2 protein.
Length = 161
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 347 CNVCKEISTDERFLKPKEC-CEYAICNACCVTMWKTATTHAKCPAC 481
C VC + KPK C C + C AC + KCP C
Sbjct: 97 CAVCHDSYASRGPKKPKVCSCLHTYCGACIREISSRHNGEMKCPEC 142
>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
protein Y53F4B.21 protein.
Length = 1099
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 561 YLFLTSYFDLKDNE-HVPSEPMAFIRNYLNCTFDLLDDAVLM 683
YLFLT+ L D + H + +AFI N NC L DA+ +
Sbjct: 96 YLFLTAEESLMDTDGHRINNLVAFIGNMYNCLLKLRSDALTL 137
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 377 ERFLKPKEC-CEYAICNACCVTMWKTATTHAKCPACRTSY 493
+R+ +PK C++ C C + T + KCP CR +
Sbjct: 48 DRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAEH 87
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 377 ERFLKPKEC-CEYAICNACCVTMWKTATTHAKCPACRTSY 493
+R+ +PK C++ C C + T + KCP CR +
Sbjct: 48 DRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAEH 87
>Z70782-2|CAA94839.1| 387|Caenorhabditis elegans Hypothetical
protein R04B5.3 protein.
Length = 387
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 224 FYANVRERVNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEIS 370
F ++ + N + LL EK+E + V V+ LF D+ ++ + C+EIS
Sbjct: 266 FKPSLEQNDNFHKLLKSEKIEMYDFLVFVVLLFWDHGIVGQTEECREIS 314
>AF016677-5|AAB66143.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1240.6 protein.
Length = 128
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 338 LYECNVCKE--ISTDERFLKPKECCEYAICNACCVTMWKTATTHAK-CP 475
L+EC VC E DE + C ++IC +C + K CP
Sbjct: 3 LFECKVCNENYSDVDESHVPRVLTCGHSICQSCAAKQMSNSLILCKTCP 51
>Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical
protein T24D1.5 protein.
Length = 415
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAKCPACR 484
+C +C E+ ++P+ C C+ I + C+ W CP CR
Sbjct: 346 DCTMCFEVP-----IEPQGCNRCQQIIGCSACIVHWHHHALSPSCPLCR 389
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATT-HAKCPACRTSYK 496
+C VC + + L C + C C + + H +CP CR K
Sbjct: 21 QCQVCYQPFNETTKLARSLHCGHTFCTECIRNVQNYGNSPHLECPTCRAETK 72
>Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical
protein C47G2.5b protein.
Length = 717
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +2
Query: 137 NSVLSVLETVARRVEANQKLFCVLF*KYKFYANVRERVNTNCLLFIEKLETINKTVKVMN 316
N + ++L+TV R +EAN ++ L + E NTNC+ EK+ +++ +N
Sbjct: 340 NRLPNILQTVLRDIEANGSVWQPLL------RLIIELCNTNCMSTHEKIAVAFRSLPFIN 393
Query: 317 LFVDNSVLYECNV 355
L +L +V
Sbjct: 394 LIKAAKMLPRASV 406
>Z49125-6|CAA88937.2| 776|Caenorhabditis elegans Hypothetical
protein C47G2.5a protein.
Length = 776
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +2
Query: 137 NSVLSVLETVARRVEANQKLFCVLF*KYKFYANVRERVNTNCLLFIEKLETINKTVKVMN 316
N + ++L+TV R +EAN ++ L + E NTNC+ EK+ +++ +N
Sbjct: 340 NRLPNILQTVLRDIEANGSVWQPLL------RLIIELCNTNCMSTHEKIAVAFRSLPFIN 393
Query: 317 LFVDNSVLYECNV 355
L +L +V
Sbjct: 394 LIKAAKMLPRASV 406
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 168 RDALKLIKNSFACCFKNINSMQMYVNELIQIA 263
R K ++NS CFK++NS Q V+ +A
Sbjct: 6 RKTPKQLRNSVESCFKSVNSRQFSVSSFSAVA 37
>AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine
receptor, class x protein26 protein.
Length = 331
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 337 NRIVYEQIHNFNSFINSFQLFNKQQAICINSFTYICIEFIFLKQHA-KEFLI 185
N +V I S NSF + K A+C +C+ F+F Q A FL+
Sbjct: 22 NFLVLFSIGKTESMKNSFGIITKNLAVCNIGMCGLCLFFLFPMQLAPSSFLV 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,837,923
Number of Sequences: 27780
Number of extensions: 387009
Number of successful extensions: 1163
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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