Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120289.Seq
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.58 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 528 NLLT-LERDHFKYLFLTSYFDLKDNEHVPSEPMAFIRNYLNCTFDLLDD 671
           N+LT ++   FK LF     DL++N     E  AF+  Y   T +L D+
Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDN 393


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 262 AICINSFTYICIEFIFLKQHAKEF 191
           AIC+  FT+  I+F+ +K    E+
Sbjct: 501 AICVGVFTFNIIKFVPVKYLTYEY 524


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 262 AICINSFTYICIEFIFLKQHAKEF 191
           AIC+  FT+  I+F+ +K    E+
Sbjct: 554 AICVGVFTFNIIKFVPVKYLTYEY 577


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 402 HSFGFKNLSSVDISLQTLHS 343
           HS   +N  SV I  +TLH+
Sbjct: 319 HSTDIQNCDSVKIKFETLHT 338


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 391 AKRMLRIRYMQRVLRYHVENGHHARKVSSVQD 486
           A  +++   +QR   +H++N HH  + ++VQD
Sbjct: 129 ATGLIKQETLQR--HHHLQNHHHHLQSTAVQD 158


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 438  VTQHALHIAYSQHSFGFKNLSSVDISL 358
            V   AL   YSQ  F    + ++D+SL
Sbjct: 1343 VPSDALIALYSQGLFSLSEIDNLDVSL 1369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,293
Number of Sequences: 438
Number of extensions: 4832
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)