Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120289.Seq
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 37 0.012
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 37 0.017
At1g74870.1 68414.m08677 expressed protein contains similarity t... 36 0.029
At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger) fa... 36 0.038
At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger) fa... 36 0.038
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa... 35 0.067
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 35 0.067
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 34 0.12
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 33 0.27
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 32 0.36
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 32 0.47
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 32 0.47
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa... 31 0.62
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 31 0.62
At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger) fa... 31 0.62
At1g72200.1 68414.m08348 zinc finger (C3HC4-type RING finger) fa... 31 0.62
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 31 0.62
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 31 0.82
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 31 0.82
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 31 0.82
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 31 0.82
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ... 30 1.4
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At3g25940.1 68416.m03233 transcription factor S-II (TFIIS) domai... 30 1.4
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 30 1.4
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (... 30 1.9
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 30 1.9
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 29 3.3
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At1g18740.1 68414.m02337 expressed protein 29 3.3
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 4.4
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ... 29 4.4
At1g17145.1 68414.m02090 expressed protein 29 4.4
At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative ... 28 5.8
At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 28 5.8
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 28 5.8
At5g38070.1 68418.m04587 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At4g11370.1 68417.m01833 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 28 7.7
>At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 236
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 347 CNVC-KEISTDERFLKPKECCEYAICNAC---CVTMWKTATTHAKCPACRTSY 493
C +C +E+ ++ LKP +C Y IC C + M + T +CPACRT Y
Sbjct: 9 CPLCTEEMDLTDQHLKPCKC-GYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 487
EC+VC + TD L+ C++A + C+ W H CP CRT
Sbjct: 141 ECSVCLMVFTDSDELRQLSECKHAF-HVLCIETW--LKDHPNCPICRT 185
>At1g74870.1 68414.m08677 expressed protein contains similarity to
hypothetical proteins
Length = 289
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKEC-CEYAICNACCVTMWKTATTHAKCPACRTSYK 496
EC +C E+ D L+ + C C + IC C K + A+CPACR YK
Sbjct: 211 ECPICSELM-DATDLEFEPCTCGFRICLFCHN---KISENEARCPACRKDYK 258
>At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 344 ECNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 484
EC +C +E+ DE ++ +CC + + C +W+ T + CP CR
Sbjct: 147 ECTICLEELCHDEESIETHDCCH--VFHKLC--LWRWIRTKSSCPLCR 190
>At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 35.5 bits (78), Expect = 0.038
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 344 ECNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
EC+VC E DE+ CC + + C+ +W +A CP CRTS
Sbjct: 133 ECSVCLNEFQEDEKLRIIPNCCH--VFHIDCIDIWLQG--NANCPLCRTS 178
>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
EC +C D L+ E C++ + C+ W +++H+ CP CRT+
Sbjct: 101 ECIICLSEFQDGDTLRVLERCKHGF-HVYCIQKW-LSSSHSSCPTCRTN 147
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 34.7 bits (76), Expect = 0.067
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Frame = +2
Query: 284 ETINKTVKVMNLFVDNSVLYE----CNVCKEISTDERFLKPKECCEYAICNACCVTM--- 442
E +N+ V+ L + NS+ E C +C E + LK C + CN+C +
Sbjct: 206 ENLNEDQPVLKLMLPNSIELEYDLTCAICLETVFNPYALK----CGHIFCNSCACSAASV 261
Query: 443 -----WKTATTHAKCPACR 484
K A H+KCP CR
Sbjct: 262 LIFQGIKAAPRHSKCPICR 280
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 347 CNVC-KEISTDERFLKPKECCEYAICNAC---CVTMWKTATTHAKCPACRTSY 493
C +C +E+ ++ LKP +C Y IC C + M + + +CPACRT Y
Sbjct: 9 CPLCAEEMDLTDQQLKPCKC-GYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNEW 520
EC +C E T + + P CC +A+C C W T + CP CR S K +++ W
Sbjct: 154 ECGICLEPCT--KMVLPN-CC-HAMCIKC-YRNWNTKSE--SCPFCRGSIKRVNSEDLW 205
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 347 CNVCKEISTDERF-LKPKEC--CEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNE 517
C++C+E S DE F K C C++ IC C +K H K K A + +E
Sbjct: 502 CHICQE-SKDESFSCKKLNCIECDFVICFKCATLPYKARYQHDKHFLKFYEAKEANDHSE 560
Query: 518 W 520
W
Sbjct: 561 W 561
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 302 VKVMNLFVDNSVLYECNVCK---EISTDERFLK-PKECCEYAICNACCVTM 442
+K+ N N Y C +C+ E T+ F PK+ + CNACC T+
Sbjct: 540 LKICNGKEANDQSYWCEICEGKIEEGTERAFYNTPKKDTSFYKCNACCTTL 590
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 326 DNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 484
DN+ + C +C E T L+ CC +A CV W T + CP C+
Sbjct: 225 DNTTAFTCAICLEDYTVGDKLRLLPCCHK--FHAACVDSWLT-SWRTFCPVCK 274
>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 287 TINKTVKVMNLFVDNSVLY--ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATT 460
T+ ++KV + V+ +C+VC +E L+ C++A + C+ W +
Sbjct: 32 TVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAF-HLYCIDTW--LRS 88
Query: 461 HAKCPACR 484
H CP CR
Sbjct: 89 HTNCPLCR 96
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 YECNVCK-EISTDERF-LKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
++C VC E T+++ L PK C +A + C+ W +H+ CP CR+S
Sbjct: 132 FDCAVCLCEFETEDKLRLLPK--CSHAF-HMDCIDTW--LLSHSTCPLCRSS 178
>At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 217
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 487
EC VC + ++ + C++ + + CV W TT + CP CRT
Sbjct: 99 ECAVCLSLLEEKDNARMLPNCKH-VFHVSCVDTW--LTTQSTCPVCRT 143
>At1g72200.1 68414.m08348 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 404
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 344 ECNVCK-EISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 484
EC+VC E DE +CC + + C+ W +H CP CR
Sbjct: 143 ECSVCLNEFEDDETLRLIPKCCH--VFHPGCIDAW--LRSHTTCPLCR 186
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/92 (23%), Positives = 36/92 (39%)
Frame = +2
Query: 245 RVNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICN 424
R++ C L E L + L+ D L C +CK+ S + + CEY++C
Sbjct: 329 RLDLRCALITEPLVYQGHMHPLFLLWDDTESLISCQMCKKKSYYSQLFCLE--CEYSLCL 386
Query: 425 ACCVTMWKTATTHAKCPACRTSYK*ARNQNEW 520
C +K H K A ++ +W
Sbjct: 387 RCVTFPYKVRYKHDSHFLTICDVKEASDELDW 418
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 347 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 469
C +C+E +++ C C+Y IC C +K H K
Sbjct: 478 CQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDK 520
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 329 NSVLYECNVC-KEISTDERFLKPKECCEYAICNACCVTM 442
++++Y C C KEI+++ERF K C EY CCVT+
Sbjct: 648 STMMYWCEACEKEINSEERFYK---CDEY-----CCVTL 678
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/69 (20%), Positives = 28/69 (40%)
Frame = +2
Query: 290 INKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAK 469
+ K K + L + + C +C R +CC + C C+ W + ++
Sbjct: 394 VKKGEKKVELVKRDVIKNVCGICLSEEDMRRLKGTLDCCSHYFC-FTCIMEW--SKVESR 450
Query: 470 CPACRTSYK 496
CP C+ ++
Sbjct: 451 CPLCKQRFR 459
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 878
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 275 EKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKEC-----------CEYAIC 421
E++E K V + ++ S + + +E+S + LK K C C + C
Sbjct: 788 EEMEIAKKKVSRLRSLIEGSSAIQ-KLRQELSEFKEILKCKACNDRPKEVVITKCYHLFC 846
Query: 422 NACCVTMWKTATTHAKCPACRTSY 493
N C + T T KCP C S+
Sbjct: 847 NPCVQKL--TGTRQKKCPTCSASF 868
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 487
EC VC + ++ + C++ I + CV W TT + CP CRT
Sbjct: 107 ECAVCLSVLKEQDKARELPNCKH-IFHVDCVDTW--LTTCSTCPVCRT 151
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 347 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 469
C +C+E +++ C C+Y IC C +K H K
Sbjct: 400 CQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDK 442
>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana]
gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 368
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
EC +C D+ L+ C++ + + C+ W H CP CRT+
Sbjct: 123 ECAICLNEFEDDETLRLLPKCDH-VFHPHCIGAWLQG--HVTCPVCRTN 168
>At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
EC +C ++ E C++ + C+ W +T + CP CRTS
Sbjct: 106 ECAICLSEFEQGESIQVLEKCQHGF-HVKCIHKW--LSTRSSCPTCRTS 151
>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1069
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 347 CNVCK---EISTD-ERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 496
C +C E+S D E F+ EC + +C C ++ + CP C+T YK
Sbjct: 39 CQICGDEIELSVDGESFVACNECA-FPVCRPCYE--YERREGNQSCPQCKTRYK 89
>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
family protein zinc finger protein, Arabidopsis
thaliana, gb:L76926
Length = 225
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
+C+VC E L+ C + + C+ +W T+H CP CR S
Sbjct: 96 QCSVCLGDYQAEEKLQQMPSCGHTF-HMECIDLW--LTSHTTCPLCRLS 141
>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
family protein RING-H2 finger protein RHA1a, Arabidopsis
thaliana,AF078683
Length = 236
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 490
+C+VC E L+ C + + C+ +W T+H CP CR S
Sbjct: 110 QCSVCLGDYQAEEKLQQMPSCGHTF-HMECIDLW--LTSHTTCPLCRLS 155
>At3g25940.1 68416.m03233 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|O94703
DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC
2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam
profile PF01096: Transcription factor S-II (TFIIS)
Length = 119
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 407 EYAICNACCVTMWKTATTHAKCPACRTS 490
E+ CN C + +T +A+CP C+T+
Sbjct: 8 EFLFCNLCGTMLVLKSTKYAECPHCKTT 35
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 347 CNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSY 493
C +C E T+ R C++ C A C+ W ++ CP C T +
Sbjct: 39 CPICLENLTERRSAAVITVCKHGYCLA-CIRKW--SSFKRNCPLCNTRF 84
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 496
EC VC + E + C + C C + K +CPAC K
Sbjct: 5 ECPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVK 55
>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
(Ath-B) nearly identical to gi:2827143, cellulose
synthase, catalytic subunit (Ath-B)
Length = 1065
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 284 ETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTH 463
ET K +K N+ + NV K + D RF+ + C + +C C ++ +
Sbjct: 6 ETAGKPMK--NIVPQTCQICSDNVGKTVDGD-RFVAC-DICSFPVCRPCYE--YERKDGN 59
Query: 464 AKCPACRTSYK 496
CP C+T YK
Sbjct: 60 QSCPQCKTRYK 70
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 404 CEYAICNACCVTMWKTATTHAKCPACRTSY 493
C + CNAC V K+ A CP C+ Y
Sbjct: 366 CNHVFCNACIV---KSMKMDATCPVCKIPY 392
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNEW 520
EC +C E T + + P CC +++C C W + CP CR S K +++ W
Sbjct: 161 ECGICLETCT--KMVLPN-CC-HSMCIKC-YRNWNLKSQ--SCPFCRGSMKRVNSEDLW 212
>At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 283
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 296 KTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCP 475
+ V+V N+ N+ EC +CKE ++ R + C + + C+ W + CP
Sbjct: 197 RAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHF--FHWKCILPWLSKKN--TCP 252
Query: 476 ACR 484
CR
Sbjct: 253 FCR 255
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 341 YECNVCKEISTDERFLKPKECCEYAICNAC 430
+ CN CK T R L+ CEY+IC C
Sbjct: 450 FRCNGCKRGLTKNR-LQCSTLCEYSICYEC 478
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 344 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 484
EC +C E +K C + + C+ W ++H+ CP CR
Sbjct: 130 ECAICLSEFVAEERVKLLPTCHHGF-HVRCIDKW--LSSHSSCPTCR 173
>At1g18740.1 68414.m02337 expressed protein
Length = 382
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 221 KFYANVRERVNTNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDER 382
K + R NC +++++ I K+ ++MN +D S+ + N KE+ +R
Sbjct: 290 KIVEESKRRDRKNCCGLLKEIDRIEKSSRLMNELID-SIHFPLNDDKEVEVKQR 342
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 338 LYECNVCKEISTDERFLKPKEC--CEYAICNAC 430
L E CK T+ LKP C CEYA+C C
Sbjct: 389 LEETKQCKACGTE--ILKPLSCLVCEYALCIRC 419
>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 591
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 465 ACVVAVFHMVTQHALHIAYS 406
ACV+A H +T +LH AYS
Sbjct: 399 ACVIAYLHWMTDTSLHAAYS 418
>At1g17145.1 68414.m02090 expressed protein
Length = 335
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 338 LYECNVCKEISTDERFLKPKECCEYAICNACCVTMWK-TATTHAKCPACRTS 490
L EC +C L CC +IC C + M + +CP C+TS
Sbjct: 60 LEECPICFLYYPS---LNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTS 108
>At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 332
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 347 CNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK*ARNQNEW 520
C VCK S + + + + C+Y+IC C +K H K A +Q +W
Sbjct: 155 CQVCKYKSYNSKLICME--CDYSICLRCATFPYKARYKHDSHFLTICDGKEANDQPDW 210
>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHA1a
[Arabidopsis thaliana] GI:3790554; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 176
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 347 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSY 493
C VC E D+ + C I + C+ W CP CRT +
Sbjct: 105 CAVCLHEFENDDEIRRLTNCQH--IFHRSCLDRWMMGYNQMTCPLCRTPF 152
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 87 CIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMY 239
C+ E+ D+G +++ + K ++ K F C FKN+ ++ ++
Sbjct: 88 CLNELVKMKECMDKGKLLIIPIFYKVKAYEVRYQKGRFGCVFKNLRNVDVH 138
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 347 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 469
C +C++ +T FL+ C C+Y IC C ++ H K
Sbjct: 509 CQICQQKAT---FLRKLNCIECDYVICFKCATLPYEAKYKHDK 548
>At5g38070.1 68418.m04587 zinc finger (C3HC4-type RING finger)
family protein contains InterPro Entry IPR001841
Zn-finger, RING; contains PROSITE PS00190: Cytochrome c
family heme-binding site signature
Length = 259
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +2
Query: 332 SVLYECNVCKEISTDERFLKPKECC-EYAICNACCVTMWKTATTHAKCPACRTSYK 496
S +C +C + D P C + CV W C CR YK
Sbjct: 49 SKFVQCRICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYK 104
>At4g11370.1 68417.m01833 zinc finger (C3HC4-type RING finger)
family protein strong similarity to RING-H2 finger
protein RHA1a [Arabidopsis thaliana] GI:3790554;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 159
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 347 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSY--K*ARNQNE 517
C VC + +D++ + +C + + C+ W KCP CR + K Q++
Sbjct: 86 CTVCLSDFESDDKVRQLPKCGH--VFHHYCLDRWIVDYNKMKCPVCRHRFLPKEKYTQSD 143
Query: 518 W 520
W
Sbjct: 144 W 144
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 341 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHA-KCPACR 484
+ECN+C E++ D C + C C+ W +H+ +CP C+
Sbjct: 26 FECNICFELAQDPIV----TLCGHLFCWP-CLYRWLHHHSHSQECPVCK 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,968
Number of Sequences: 28952
Number of extensions: 334896
Number of successful extensions: 927
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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