Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120288.Seq
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   6.3  

>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
           protein T21C9.6 protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 429 YKKMHKNFFNESHCNDALDVLAKYTYIL 346
           Y ++ K + + SHC+ +L + + +TY+L
Sbjct: 817 YDELEKLWCDASHCHTSLSMFSSFTYVL 844


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 690 INVSKYINESRYNDVLFKN-NVIRQTIRKISKNKRL 586
           I+++KYI+ ++YND++  + N +  T+   + NK +
Sbjct: 426 IDINKYIDINKYNDIIITHENTVNPTVEFNTINKEI 461



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 533 IRQTIRRRIKINVSKYINEGRYNDVLFKN-NVIRQTI 426
           I + I  +  I+++KYI+  +YND++  + N +  T+
Sbjct: 416 IHKYILSKYNIDINKYIDINKYNDIIITHENTVNPTV 452



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/60 (21%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 596 INVSKYINESRYNDVLFKNNVIRQTIRRRIKIN-VSKYINEGRYNDVLFKNNVIRQTIRK 420
           I+++KYI+ ++YND++  +     T+   ++ N ++K I   +  ++L   ++ ++ + K
Sbjct: 426 IDINKYIDINKYNDIIITH---ENTVNPTVEFNTINKEIVGSKKINILLPKHLYKKLLNK 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,363
Number of Sequences: 27780
Number of extensions: 156905
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)