Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120288.Seq
(762 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 24 1.3
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 24 1.3
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 24 1.3
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 2.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 2.3
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 22 5.4
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.4
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 7.1
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 22 7.1
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 22 7.1
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 7.1
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.3
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = -1
Query: 441 YSSNYKKMHKNF 406
Y++NYKK++KN+
Sbjct: 109 YNNNYKKLYKNY 120
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.3
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = -1
Query: 441 YSSNYKKMHKNF 406
Y++NYKK++KN+
Sbjct: 109 YNNNYKKLYKNY 120
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.2 bits (50), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 687 NVSKYINESRYNDVLFKN-NVIRQ 619
N+S Y N++ YN L+ N N I Q
Sbjct: 92 NISNYNNDNNYNKKLYYNINYIEQ 115
Score = 24.2 bits (50), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 593 NVSKYINESRYNDVLFKN-NVIRQ 525
N+S Y N++ YN L+ N N I Q
Sbjct: 92 NISNYNNDNNYNKKLYYNINYIEQ 115
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 500 NVSKYINEGRYNDVLFKN-NVIRQ 432
N+S Y N+ YN L+ N N I Q
Sbjct: 92 NISNYNNDNNYNKKLYYNINYIEQ 115
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.4 bits (48), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 687 NVSKYINESRYNDVLFKN-NVIRQ 619
N+S Y N + YN L+ N N I Q
Sbjct: 92 NISNYNNNNNYNKKLYYNINYIEQ 115
Score = 23.4 bits (48), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 593 NVSKYINESRYNDVLFKN-NVIRQ 525
N+S Y N + YN L+ N N I Q
Sbjct: 92 NISNYNNNNNYNKKLYYNINYIEQ 115
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -2
Query: 500 NVSKYINEGRYNDVLFKN-NVIRQ 432
N+S Y N YN L+ N N I Q
Sbjct: 92 NISNYNNNNNYNKKLYYNINYIEQ 115
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.4 bits (48), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 687 NVSKYINESRYNDVLFKN-NVIRQ 619
N+S Y N + YN L+ N N I Q
Sbjct: 330 NISNYNNNNNYNKKLYYNINYIEQ 353
Score = 23.4 bits (48), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 593 NVSKYINESRYNDVLFKN-NVIRQ 525
N+S Y N + YN L+ N N I Q
Sbjct: 330 NISNYNNNNNYNKKLYYNINYIEQ 353
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -2
Query: 500 NVSKYINEGRYNDVLFKN-NVIRQ 432
N+S Y N YN L+ N N I Q
Sbjct: 330 NISNYNNNNNYNKKLYYNINYIEQ 353
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 72 KV*CRFNCVLSEF 110
K+ C FNCVL +F
Sbjct: 67 KLKCYFNCVLEKF 79
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 136 VRFSLCVLTE*VLNVNAYFIIILVLANFFL 225
+ ++ CVL+ N Y+IIIL A F+L
Sbjct: 100 IGYATCVLS---CWTNIYYIIILAWALFYL 126
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 136 VRFSLCVLTE*VLNVNAYFIIILVLANFFL 225
+ ++ CVL+ N Y+IIIL A F+L
Sbjct: 153 IGYATCVLS---CWTNIYYIIILAWALFYL 179
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 702 EEVKINVSKYINESRYN 652
EE+K VS YI + YN
Sbjct: 168 EEIKKEVSSYIKKIGYN 184
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 702 EEVKINVSKYINESRYN 652
EE+K VS YI + YN
Sbjct: 95 EEIKKEVSSYIKKIGYN 111
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 702 EEVKINVSKYINESRYN 652
EE+K VS YI + YN
Sbjct: 111 EEIKKEVSSYIKKIGYN 127
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 702 EEVKINVSKYINESRYN 652
EE+K VS YI + YN
Sbjct: 168 EEIKKEVSSYIKKIGYN 184
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,799
Number of Sequences: 438
Number of extensions: 2236
Number of successful extensions: 25
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -