Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120286.Seq
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.3  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    23   3.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   5.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 505  YSLKKMYDRGLLVGRENTSRMEYKPGPEPTDP 600
            + L +  +RGL +  +N SR +    PEP  P
Sbjct: 981  FPLLRSLNRGLGLIPDNPSREDCTKPPEPVTP 1012


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 127 IGAFVIFLYIHFHFQILQNFSLLSFFLGFYDLVFTTF 17
           +  FVI    HFH   L N + + F   +Y   +  F
Sbjct: 38  VSPFVIGYVKHFHPLALSNKNAIDFNYYYYAATYARF 74


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 306 FIDNLLPHLNFVPATMMCLE---SHQ 374
           F +++ P+L FVP  +M L+   SHQ
Sbjct: 191 FAESIPPYLFFVPPPLMFLQDFLSHQ 216


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 306 FIDNLLPHLNFVPATMMCLE---SHQ 374
           F +++ P+L FVP  +M L+   SHQ
Sbjct: 424 FAESIPPYLFFVPPPLMFLQDFLSHQ 449


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 306 FIDNLLPHLNFVPATMMCLE---SHQ 374
           F +++ P+L FVP  +M L+   SHQ
Sbjct: 424 FAESIPPYLFFVPPPLMFLQDFLSHQ 449


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 83  LEMKMNV*KNDKSSNLNYYIAI 148
           +EM ++  KNDKS    +Y+ I
Sbjct: 295 VEMALDNWKNDKSLKRKFYLTI 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,366
Number of Sequences: 336
Number of extensions: 4600
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)