Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120284.Seq
         (826 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 519 SITRACRTQRTSICTPNDRRAKARRPPSG 433
           ++T  C   ++S+C+P      +R  PSG
Sbjct: 138 NVTPNCDV-KSSVCSPGSGHQDSRTSPSG 165


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 519 SITRACRTQRTSICTPNDRRAKARRPPSG 433
           ++T  C   ++S+C+P      +R  PSG
Sbjct: 138 NVTPNCDV-KSSVCSPGSGHQDSRTSPSG 165


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 453  ARRPPSGNIGKFENIYNWVVCAYLSWRW 370
            + +PP     K ++ Y  +VC + +W W
Sbjct: 1382 SEKPPLPEELKPQSGYFKIVCYFTNWAW 1409


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 519 SITRACRTQRTSICTPNDRRAKARRPPSG 433
           ++T  C   ++S+C+P      +R  PSG
Sbjct: 138 NVTPNCDV-KSSVCSPGSGHQDSRTSPSG 165


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 601 FVATPLLVVLSLFCAFVESL 660
           F   PL+++L L+C   ++L
Sbjct: 245 FFIIPLIILLILYCIIAKNL 264


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 576 CSASTPEGICSNTTTSC 626
           CS+S P    +N+TT+C
Sbjct: 236 CSSSQPVLSTTNSTTNC 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,554
Number of Sequences: 336
Number of extensions: 3949
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)