Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120284.Seq
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   2.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   4.3  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 270 DGMIKNEDVQRFNRINRNDLI-SACMQINVQTYMPNATIDMRKQPNCIYF 416
           D + K  +V+RF R+ +   I S    I  Q    N TID +  P C+++
Sbjct: 50  DEVKKQREVKRFKRVGKRGKIGSPSSSIRKQ----NDTIDWKNSPLCVFY 95


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 558 STNYLKCSASTPEGICSNTTTSCSQFVL 641
           +T  +  SA  PEGIC  T T  + FVL
Sbjct: 515 ATRSVGLSAIKPEGICKATYTGHTDFVL 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,443
Number of Sequences: 5004
Number of extensions: 60338
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)