Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120284.Seq
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0292 - 15420378-15421229                                         28   7.8  
06_01_1104 + 9097108-9097779                                           28   7.8  
04_03_0956 - 21228702-21228705,21228742-21229130                       28   7.8  

>08_02_0292 - 15420378-15421229
          Length = 283

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 499 AARSGYRPPVGRVWRNGGGRQRTI*SAAHQRRREFVAT 612
           A R   R   GR WR  GG +R    A  +RRR    T
Sbjct: 149 AGRGSRRRRDGRPWRRRGGAEREAAGADDERRRPVAET 186


>06_01_1104 + 9097108-9097779
          Length = 223

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 499 AARSGYRPPVGRVWRNGGGRQRTI*SAAHQRRREFVAT 612
           A R   R   GR WR  GG +R    A  +RRR    T
Sbjct: 89  AGRGSRRRRDGRPWRRRGGAEREAAGADDERRRPVAET 126


>04_03_0956 - 21228702-21228705,21228742-21229130
          Length = 130

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 481 DTCALRAARSGYRPPVGRVWRNGGGRQR 564
           D C+  AAR   RP    +W+ G GR+R
Sbjct: 99  DECSDAAARCYRRPLFSELWKEGEGRKR 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,025,852
Number of Sequences: 37544
Number of extensions: 399695
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)