Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120284.Seq
         (826 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)                28   8.0  
SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.0  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 339  CMQINVQTYMPNATIDMRKQPNCIYFRICQYCHLEADVPSPDDHSVYRYLC 491
            CM   V  Y PN+T+ +   P+C    +C      +  P P+D S+  YLC
Sbjct: 2475 CMPCPVGQYCPNSTVSVGGPPDCHAGYVCTG---GSSTPEPNDPSM-GYLC 2521


>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 331 FRLACK-STFRRTCPTPR*ICANNPIVYIFEFANIATWRPTCLRPTIIRCTDTCALRAAR 507
           +R  C  + +R+ CP  R      P+    +   +A++R  C  P+  R    C L   R
Sbjct: 526 YRKGCPLARYRKDCPLAR-YRKGCPLARYRKGCPLASYRKGC--PSA-RYRKGCPLARYR 581

Query: 508 SGYRPPVGRVWRNGG 552
            GY P + + WR  G
Sbjct: 582 KGYHPELLQTWRRAG 596


>SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)
          Length = 196

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 89  VASQHDYDRDQIKRELNSLRRNVHD 15
           ++S+H+ ++D+I+ ELN  RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154


>SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 89  VASQHDYDRDQIKRELNSLRRNVHD 15
           ++S+H+ ++D+I+ ELN  RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,461,239
Number of Sequences: 59808
Number of extensions: 474920
Number of successful extensions: 1337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)