Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120284.Seq
         (826 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97145-1|AAC51647.1|  464|Homo sapiens RET ligand 2 protein.           30   8.8  
U93703-1|AAB61922.1|  464|Homo sapiens glial cell line-derived n...    30   8.8  
BC041688-1|AAH41688.1|  464|Homo sapiens GDNF family receptor al...    30   8.8  
AY941828-1|AAX46325.1|  359|Homo sapiens glial cell line-derived...    30   8.8  
AY326396-1|AAP88378.1|  331|Homo sapiens glial cell line-derived...    30   8.8  
AF002700-1|AAC52036.1|  464|Homo sapiens GDNF family receptor al...    30   8.8  

>U97145-1|AAC51647.1|  464|Homo sapiens RET ligand 2 protein.
          Length = 464

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 440
           AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>U93703-1|AAB61922.1|  464|Homo sapiens glial cell line-derived
           neurotrophic factor receptor beta protein.
          Length = 464

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 440
           AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>BC041688-1|AAH41688.1|  464|Homo sapiens GDNF family receptor alpha
           2 protein.
          Length = 464

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 440
           AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>AY941828-1|AAX46325.1|  359|Homo sapiens glial cell line-derived
           neurotrophic factor family receptor alpha2b protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 440
           AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 123 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 158


>AY326396-1|AAP88378.1|  331|Homo sapiens glial cell line-derived
           neurotrophic factor family receptor alpha2c protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 440
           AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 95  ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 130


>AF002700-1|AAC52036.1|  464|Homo sapiens GDNF family receptor alpha
           2 protein.
          Length = 464

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 440
           AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,706,898
Number of Sequences: 237096
Number of extensions: 2051798
Number of successful extensions: 4021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4021
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)