Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120283.Seq
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 141 7e-34
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 116 2e-26
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 70 3e-12
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 31 0.83
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 30 2.5
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 30 2.5
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 3.3
11_06_0445 - 23679918-23680282,23680415-23683349 29 5.8
07_03_1052 + 23598547-23600181 29 5.8
12_02_0987 - 25060266-25060461,25061124-25063351 28 7.7
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 141 bits (341), Expect = 7e-34
Identities = 63/98 (64%), Positives = 78/98 (79%)
Frame = -1
Query: 801 EEKYLIATSEQPILLSTGMNGFQESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEK 622
EEKYLIATSEQP+ + + LPI+YAG STCFR+E GSHGRDT GIFRVHQFEK
Sbjct: 176 EEKYLIATSEQPLCAYHLGDRIYPAELPIRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEK 235
Query: 621 VEQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRV 508
+EQF +TSP+DN SW+M +EMI N+E+F K +GLPY++
Sbjct: 236 IEQFCVTSPNDNESWEMHEEMIKNSEDFYKEIGLPYQL 273
Score = 113 bits (271), Expect = 2e-25
Identities = 52/84 (61%), Positives = 64/84 (76%)
Frame = -3
Query: 508 VNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATE 329
V+IVSGALN AA+KK DLEAWFP S +RELVSCSNC ++QARRL + YGQ K + +
Sbjct: 274 VSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYGQKKNDEQSKQ 333
Query: 328 YVHMLNATMCATTRVICAILEVHQ 257
+VHMLN+T+ AT R +C ILE Q
Sbjct: 334 FVHMLNSTLTATERTLCCILENFQ 357
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 116 bits (280), Expect = 2e-26
Identities = 48/70 (68%), Positives = 61/70 (87%)
Frame = -1
Query: 717 IKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNASWQMMDEMINNAEEF 538
++YAG STCFR+E GSHGRDT GIFRVHQFEK+EQF +TSP+DN SW+M +EMI N+E+F
Sbjct: 245 MRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDF 304
Query: 537 CKALGLPYRV 508
K +GLPY++
Sbjct: 305 YKEIGLPYQL 314
Score = 113 bits (271), Expect = 2e-25
Identities = 52/84 (61%), Positives = 64/84 (76%)
Frame = -3
Query: 508 VNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATE 329
V+IVSGALN AA+KK DLEAWFP S +RELVSCSNC ++QARRL + YGQ K + +
Sbjct: 315 VSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYGQKKNDEQSKQ 374
Query: 328 YVHMLNATMCATTRVICAILEVHQ 257
+VHMLN+T+ AT R +C ILE Q
Sbjct: 375 FVHMLNSTLTATERTLCCILENFQ 398
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 69.7 bits (163), Expect = 3e-12
Identities = 39/96 (40%), Positives = 55/96 (57%)
Frame = -1
Query: 798 EKYLIATSEQPILLSTGMNGFQESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKV 619
++ LI T+E P+ + +S LP KY S CFR E G+ G TRG++RVHQF KV
Sbjct: 333 DQCLIGTAEIPVGGIHMDSILPDSDLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKV 392
Query: 618 EQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYR 511
E FV P + S + +E+I EE +LGL ++
Sbjct: 393 EMFVFCRPEE--SDKCHEELITIEEELYASLGLHFK 426
Score = 64.5 bits (150), Expect = 1e-10
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Frame = -3
Query: 508 VNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQT-------- 353
+++ +G L A +K D+EAW PG + E+ S SNC +YQ+RRL +R+ +
Sbjct: 428 LDMATGDLGAPAYRKFDIEAWMPGLDRYGEISSASNCTDYQSRRLGIRFRPSPADPPPAN 487
Query: 352 ----KKMNAATEYVHMLNATMCATTRVICAILEVHQ 257
K + T++VH LNAT A R+I ILE Q
Sbjct: 488 AKKGKGSSGPTQFVHTLNATAVAVPRLIICILENFQ 523
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 31.5 bits (68), Expect = 0.83
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 317 HVHVFSGSVHLFRLTVPYKQSSCLVLQTVTTRDKFPERTGSWEP 448
H+ +F G++HL+ + ++ C+ + R +PE +WEP
Sbjct: 187 HIAIF-GTIHLYEFSYEDQEQDCVQKKQQYGRRGWPESANTWEP 229
>05_03_0369 - 13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 725 LFPSNMRDSPHASD--KRLDLMDVTRVVSFEYI-NLKRWNNLF*HLLMITHLGK 573
L N+ D PH + + L+ + VV Y LKRW + + + + H+GK
Sbjct: 1254 LMELNINDCPHLKSLPESIQLLPMLEVVKVSYCPELKRWYEIEENKMKLAHIGK 1307
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 801 EEKYLIATSEQPILLSTGMNGFQESSLPIKYAG 703
E++Y + S + L+ G+NG ES +P Y G
Sbjct: 365 EKRYALEFSSSSVSLTKGVNGLPESVMPSVYVG 397
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 350 KDERCH*IRAHAERDHVRHHQGHLRHTRSSPDEDGIKVP 234
+DER RAH R H HHQ T SS + IK+P
Sbjct: 420 RDERYR-ERAHGHRSHRDHHQSSRGSTLSSRLQGRIKLP 457
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 28.7 bits (61), Expect = 5.8
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 305 GRVQHVHVFSGSVHLFRLTVPYKQSSCLVLQTVTTRDKFPERTGSWEPSLQV*LLGGSMV 484
GR+ H+ + SV+ +P SSC L+T+ E G PSL ++
Sbjct: 117 GRLTHLRYLNLSVNALSGEIPETLSSCSRLETINLYSNSIE--GKIPPSLAHCSFLQQII 174
Query: 485 *SSRHDVHTRYGSP-SALQNSSALFI 559
S+ H +H S L N SALFI
Sbjct: 175 LSNNH-IHGSIPSEIGLLPNLSALFI 199
>07_03_1052 + 23598547-23600181
Length = 544
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 398 SGVPSKKIACKVRSDEKDERCH*IRAHAERDHVRHHQGHLRHTRSSPD 255
S +PS+ + SD CH RA ++ V HH G H SPD
Sbjct: 14 SNIPSQNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSH---SPD 58
>12_02_0987 - 25060266-25060461,25061124-25063351
Length = 807
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 567 PSFAKMRYHEEMLEQIVPPFQIDVLERYHACHVHEIQPLV*SMWRVPHI*WEEMILGSHS 746
P+F E +L+ PP + LE + H ++I PL+ + + HI + + S
Sbjct: 284 PAFIYCWLEEHLLDPWPPPTEWAELELWPPPHENDILPLLINGF--THILVDRKAI---S 338
Query: 747 SLWKAVWAVL 776
WKA+W+ L
Sbjct: 339 KFWKAIWSEL 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,230,232
Number of Sequences: 37544
Number of extensions: 521363
Number of successful extensions: 1445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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