Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120283.Seq
(816 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 1e-19
SB_47724| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_27639| Best HMM Match : Pollen_allerg_1 (HMM E-Value=1.3) 31 1.5
SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_7097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13) 29 4.5
SB_20582| Best HMM Match : DAN (HMM E-Value=1.6) 29 6.0
>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/62 (70%), Positives = 47/62 (75%)
Frame = -1
Query: 801 EEKYLIATSEQPILLSTGMNGFQESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEK 622
EEKYLIATSEQPI ++ LP KYAG STCFRQE G+HGRDTRGIFRVHQFEK
Sbjct: 275 EEKYLIATSEQPIAAFHRGEWMDKNDLPKKYAGFSTCFRQEAGAHGRDTRGIFRVHQFEK 334
Query: 621 VE 616
E
Sbjct: 335 TE 336
Score = 52.0 bits (119), Expect = 6e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = -3
Query: 334 TEYVHMLNATMCATTRVICAILEVHQT 254
TEYVHMLNATMCA +RVICAILE +QT
Sbjct: 335 TEYVHMLNATMCAVSRVICAILENNQT 361
Score = 35.9 bits (79), Expect = 0.039
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2
Query: 254 EDGIKVPEILKPWLPKQYQELIPFVKPAPID 162
E+G+ +P+ L P+LP Q + FVKPAPID
Sbjct: 362 EEGVVMPQALHPYLP-QDLHFLKFVKPAPID 391
>SB_47724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 517 VPCVNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSN 401
+PC+N G +ASK+L+ F G G+F+ SC N
Sbjct: 1 MPCLNGKKGEHRKSASKQLEFHMHFQGYGSFKVFSSCRN 39
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 232 SGTLMPSSSGELRVWRK*PWWWRTWSRSACARIQWQRS 345
S +L P S +W + W W WSRS R W RS
Sbjct: 1627 SRSLWPRSLLPWSLWPRSLWPWSLWSRSMWPRSLWPRS 1664
>SB_27639| Best HMM Match : Pollen_allerg_1 (HMM E-Value=1.3)
Length = 118
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 292 WWRTWSRSACARIQWQRSSFSSDRTLQAIFLLG 390
W + W S C+ ++W +SF R A++L G
Sbjct: 8 WRQKWYNSVCSIVRWYSTSFQVYRDFLAVYLPG 40
>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -1
Query: 729 SSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNASWQMMDEMINN 550
SS+ I Y S+C E+ S+G G + ++ ++ +D W+++ +N
Sbjct: 220 SSMHIAYITASSC--DELLSYGVTASGEYAIYPRNRLVYTYCDMDNDGGGWEVIQRRVNG 277
Query: 549 AEEF 538
+E F
Sbjct: 278 SENF 281
>SB_7097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 355 TKKMNAATEYVHMLNATMCATTRVICAILEVH-QTRTASRYRKS 227
T+ M+A + H ++ C +CAILEV +TR+A Y K+
Sbjct: 36 TRAMHAVSLRWHSVSNLACDNASCVCAILEVESKTRSALPYPKT 79
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 771 QPILLSTGMNGFQESSLPIKYAGLSTCFRQEVG 673
Q L +T + GF PI YA LS F+QE G
Sbjct: 276 QVYLATTNLAGFSSCINPIIYAALSRPFQQEFG 308
>SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)
Length = 435
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 298 RTWSR-SACARIQWQRSSFSSDRTLQAIFLLGTPDSYYKR 414
RTWSR AC + RSS SS T AI + +P S R
Sbjct: 32 RTWSRLRACVCVLAMRSSASSGGTRNAIISIVSPRSRISR 71
>SB_20582| Best HMM Match : DAN (HMM E-Value=1.6)
Length = 264
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -3
Query: 562 NDKQC*RVLQSTRTTVPCVNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLE 392
N K R++ ++ C I S L HA + L L +GA R L SCSNCL+
Sbjct: 39 NRKSEIRIVVQSQDKETCQMITSSTL-HALTDYLSLSFPEYTTGA-RSLASCSNCLQ 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,183,179
Number of Sequences: 59808
Number of extensions: 572136
Number of successful extensions: 1494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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