Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120283.Seq
         (816 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein O-fucosylt...    25   3.7  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    25   3.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   6.4  

>DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein
           O-fucosyltransferase 2 protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = -3

Query: 481 HAASKKLDLEAWFPGSGAFRELVSCSNCLEYQA-----RRLLVRYGQTKKMNAATEYVHM 317
           H   K  D    + G G F        CL +Q       RLL RY   +    AT YVH+
Sbjct: 179 HVCPKGHDGALAYFGYGNFT--ADAFTCLHFQGSAMLLHRLLERYRPGRPR--ATRYVHV 234

Query: 316 LNA 308
           LNA
Sbjct: 235 LNA 237


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 645 FRVHQFEKVEQFVLT 601
           FR+H+  KV+QFV++
Sbjct: 585 FRIHKLTKVDQFVMS 599


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 562 FVHHLPRCVIMRR 600
           F++HLP+ ++MRR
Sbjct: 344 FINHLPKLLVMRR 356


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 871,677
Number of Sequences: 2352
Number of extensions: 18506
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)