Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120283.Seq
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-1|CAA93105.1| 487|Caenorhabditis elegans Hypothetical pr... 156 2e-38
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 70 2e-12
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 70 2e-12
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 5.3
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 5.3
Z74032-3|CAA98461.1| 220|Caenorhabditis elegans Hypothetical pr... 28 9.2
AL032658-1|CAA21743.2| 782|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z68882-1|CAA93105.1| 487|Caenorhabditis elegans Hypothetical
protein C47E12.1 protein.
Length = 487
Score = 156 bits (379), Expect = 2e-38
Identities = 72/103 (69%), Positives = 83/103 (80%)
Frame = -1
Query: 816 GDTVVEEKYLIATSEQPILLSTGMNGFQESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRV 637
GDT V+EKYLIATSEQPI +E+ LPIKYAG+STCFRQEVGSHGRDTRGIFRV
Sbjct: 259 GDTSVDEKYLIATSEQPIAAYHRNEWIKETELPIKYAGVSTCFRQEVGSHGRDTRGIFRV 318
Query: 636 HQFEKVEQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRV 508
HQFEK+EQFVL SP+DN SW + DEMI NAE + + L +PY+V
Sbjct: 319 HQFEKIEQFVLCSPNDNESWTLFDEMIGNAESYYQELQIPYQV 361
Score = 149 bits (361), Expect = 2e-36
Identities = 68/85 (80%), Positives = 77/85 (90%)
Frame = -3
Query: 508 VNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATE 329
VNIVSG LN+AA+KK DLEAWFPGSGA+RELVSCSNCL+YQ+RRL VRYGQTKK++
Sbjct: 362 VNIVSGELNNAAAKKFDLEAWFPGSGAYRELVSCSNCLDYQSRRLKVRYGQTKKLSGEVP 421
Query: 328 YVHMLNATMCATTRVICAILEVHQT 254
+VHMLNATMCATTRVICAILE +QT
Sbjct: 422 FVHMLNATMCATTRVICAILENNQT 446
Score = 48.4 bits (110), Expect = 6e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -2
Query: 254 EDGIKVPEILKPWLPKQYQELIPFVKPAPID 162
E+GI VP ++ W+P+ Y+ IPFVKPAPID
Sbjct: 447 EEGINVPTAIQQWMPENYRTFIPFVKPAPID 477
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = -3
Query: 496 SGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATEYVHM 317
S L +A++K D+EAW PG + E+ S SNC ++Q+RRL ++Y K + T+Y H
Sbjct: 332 SEELGASAARKFDIEAWMPGRKLYGEVSSASNCTDFQSRRLGIKY---KTADGTTKYAHT 388
Query: 316 LNATMCATTRVICAILEVHQ 257
N T A+TR + ++LE Q
Sbjct: 389 CNGTALASTRALISVLETFQ 408
Score = 54.8 bits (126), Expect = 7e-08
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -1
Query: 789 LIATSEQPILLSTGMNGFQESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQF 610
L T+E I F + LPI+ LS CFR E+ + + ++RVH+F KVE F
Sbjct: 237 LSGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAK-LYRVHEFSKVEMF 295
Query: 609 VLTSPHDNASWQMMDEMINNAEEFCKALGLPYR 511
V+++P +A+ +D ++ + +ALG+ R
Sbjct: 296 VVSTPEQSAA--ELDYLVEVQKGTFQALGVHCR 326
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = -3
Query: 496 SGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATEYVHM 317
S L +A++K D+EAW PG + E+ S SNC ++Q+RRL ++Y K + T+Y H
Sbjct: 332 SEELGASAARKFDIEAWMPGRKLYGEVSSASNCTDFQSRRLGIKY---KTADGTTKYAHT 388
Query: 316 LNATMCATTRVICAILEVHQ 257
N T A+TR + ++LE Q
Sbjct: 389 CNGTALASTRALISVLETFQ 408
Score = 54.8 bits (126), Expect = 7e-08
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -1
Query: 789 LIATSEQPILLSTGMNGFQESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQF 610
L T+E I F + LPI+ LS CFR E+ + + ++RVH+F KVE F
Sbjct: 237 LSGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAK-LYRVHEFSKVEMF 295
Query: 609 VLTSPHDNASWQMMDEMINNAEEFCKALGLPYR 511
V+++P +A+ +D ++ + +ALG+ R
Sbjct: 296 VVSTPEQSAA--ELDYLVEVQKGTFQALGVHCR 326
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical protein
C09F9.2 protein.
Length = 1642
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 720 PIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSP 595
PIK A F + HG++ RG+ V+ FE+VE V + P
Sbjct: 1060 PIKAA--PEFFENAMKYHGKNARGVMTVNFFEEVETSVESRP 1099
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 446 VPRIRCVPGTCL---L**LSGVPSKKIACKVRSDEKDERC 336
V + CVPG C+ L L G K CK ++ DERC
Sbjct: 1290 VHALTCVPGYCMSDSLCELDGNQMKCRHCKYHGEDTDERC 1329
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 446 VPRIRCVPGTCL---L**LSGVPSKKIACKVRSDEKDERC 336
V + CVPG C+ L L G K CK ++ DERC
Sbjct: 1290 VHALTCVPGYCMSDSLCELDGNQMKCRHCKYHGEDTDERC 1329
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 446 VPRIRCVPGTCL---L**LSGVPSKKIACKVRSDEKDERC 336
V + CVPG C+ L L G K CK ++ DERC
Sbjct: 1290 VHALTCVPGYCMSDSLCELDGNQMKCRHCKYHGEDTDERC 1329
>Z74032-3|CAA98461.1| 220|Caenorhabditis elegans Hypothetical
protein F35B12.4 protein.
Length = 220
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 310 RSACARIQWQRSSFSSDRTLQ 372
RSAC Q QR S SSD T+Q
Sbjct: 94 RSACTNAQAQRDSESSDETVQ 114
>AL032658-1|CAA21743.2| 782|Caenorhabditis elegans Hypothetical
protein Y76A2B.2 protein.
Length = 782
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 532 FAELFSIVYHFVHHLPRCVIMRRC*NKLFHLFKLMYSKDTTRVTSMRSNLLSEACGESRI 711
F L +I Y + H I R+ +K++ + L Y KD+ + ++ S S + + I
Sbjct: 150 FHYLTNIDYIYFHKTKIGRIERKAFSKMYQIDHL-YFKDSIEIATIESEAFSGSQVDEMI 208
Query: 712 FDG 720
FDG
Sbjct: 209 FDG 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,040
Number of Sequences: 27780
Number of extensions: 421450
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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