Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120282.Seq
         (936 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    27   0.16 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   4.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   6.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.0  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   6.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 63  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 236
           +T  P  + PS+P   I + + T + +PG++  T  D  +D  R +ST       YN+
Sbjct: 58  STLDPGRKSPSSPR--ISSPSSTKSGSPGFLTYTKADRDVDLFRGSSTPESPEHYYNQ 113


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 147 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           G +PP      + TS SNS +S  +     S E
Sbjct: 315 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 347


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 147 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           G +PP      + TS SNS +S  +     S E
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 136


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 147 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           G +PP      + TS SNS +S  +     S E
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 136


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 694 TEWECCTSPIPPPCTGRPS*VVWPPRPKRLYP 599
           +E+E C  P    CT RP   +  P+P +  P
Sbjct: 79  SEYEKCDLPFNIDCTSRPK--LQEPQPSQHCP 108


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  YY--NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNST 206
           YY  N   PP+ YP +       NA  Y ++   +P  T   +    R+  T
Sbjct: 35  YYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQRTKPT 86


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 551 RCRRTR-KNFTTVALICWVKTLWPRRPNNSA 640
           RC+    K+F T+   C   + WP RP   A
Sbjct: 15  RCKLLSCKDFDTLYRDCTTASSWPGRPPKRA 45


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  YY--NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNST 206
           YY  N   PP+ YP +       NA  Y ++   +P  T   +    R+  T
Sbjct: 26  YYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQRTKPT 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,594
Number of Sequences: 336
Number of extensions: 4639
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26271982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)