Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120282.Seq
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.41 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.94 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    28   1.6  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   2.9  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    27   5.0  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    27   5.0  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   6.6  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   6.6  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 21  QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 194
           QI     +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  +   
Sbjct: 48  QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104

Query: 195 SNSTNSVA 218
           ++ ++ +A
Sbjct: 105 NDYSSELA 112


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +3

Query: 63  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 242
           +TPPP   +PS   T+  T++   +     +P  + + K  ++ S +    A      S 
Sbjct: 690 STPPPTTSFPSTFTTSFITSSSLSS-----IPNNSTEVKTASTSSGTEIKTASTSSGSSS 744

Query: 243 EPTLTPANLFGTT 281
             + TPA+   TT
Sbjct: 745 SSSYTPASSTSTT 757


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +2

Query: 257 AGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLMIHFINT 373
           AGE++ Y      N+C+ F+ +  R ++C D +E   L+  F+NT
Sbjct: 497 AGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 129 TYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANLFGT 278
           T N AP  V    +D+ + +   NS       P N+  +P L PAN F T
Sbjct: 27  TENLAPAVVD-NVKDDLIVSKGGNSRELARNVPVNEMVQPALGPANPFVT 75


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 149 VRAAYDARQQNGHEPQQQHK-LGSDRTVQQEQRTDAHAGESI 271
           + A Y   ++  ++P Q  K +G+D  V+ EQ+ D+H  ESI
Sbjct: 76  IDAIYQNIEKTTNKPAQLWKAVGNDEVVESEQQ-DSHDAESI 116


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 192 RSNSTNSVAIAPYNKSKEPTLTPANLFGTTNVWILFKKLLDITGAM 329
           R   T  + +    K++E    P +  GT+NV+   K  L+++G +
Sbjct: 176 RDPHTQEIVLQGLMKAQEDFKGPGSFLGTSNVYFAAKYNLNVSGTV 221


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 574 FYNGGADMLGKDALAEAAKQLSLA 645
           FY    ++ GK  LAEAAKQ+ ++
Sbjct: 49  FYIPSFNLFGKGCLAEAAKQIKMS 72


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 75  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 218
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,548
Number of Sequences: 5004
Number of extensions: 71734
Number of successful extensions: 288
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)