Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120281.Seq
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    42   7e-05
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   0.42 
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    26   3.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   5.2  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   5.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.8  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   6.8  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +2

Query: 149 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKT 250
           K+ ID T    D I DV  FEKYL + +KV+GKT
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKT 44



 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARD-KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAY 417
           G+   L + VVV+R+  +K+A+ A I FS                  DWLRVV++    Y
Sbjct: 42  GKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVY 101

Query: 418 ELRYF 432
           ELRY+
Sbjct: 102 ELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 133 LDAFAADFATLHSFFASLLVQLGFLSRRF 47
           +D +  DFAT H+ + + L  +GFLS  F
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLSLVF 115


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 234 KLRAKQIPKQSRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 374
           +LR     + SR R +  +  ++  R SF  +VPE +  TLP+   F
Sbjct: 125 QLRRDLRMRLSRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 216 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 88
           ++ +    ++    G +++I    ++F  L  L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 344 KYFRYLFEKGMSAVIATFVLSL 279
           K+FRY+F   ++ ++  FVL++
Sbjct: 198 KWFRYIFRVSVAVILLDFVLNM 219


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 194  DVGNFEKYLKEHVKVEGKTNT*AITLSSPG 283
            + GN +KY + ++KV GK ++  +T  +PG
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDS-FVTHHTPG 983


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 330 PL*KRNVCGDSDFRLIPGDDNVIA*VFV 247
           P+ K  V G SDF L PG ++ +A VF+
Sbjct: 159 PIAKLRVEGISDFALSPGQNHAVA-VFI 185


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
 Frame = +2

Query: 191 LDVGNFEKYLKEHVKVEG------KTNT*AITLS-SPGIRRKSLSPQTFLFQR 328
           LD  +F K   +H++V+        +++  I+ S  P +RRKSL P+  +FQR
Sbjct: 111 LDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCPVLRRKSLLPKPKMFQR 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,323
Number of Sequences: 5004
Number of extensions: 31679
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)