Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120281.Seq
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       52   4e-07
07_03_1662 + 28447419-28447666,28448429-28448573                       47   8e-06
09_02_0195 + 5643549-5645090                                           29   3.0  
09_04_0430 + 17502387-17503505                                         28   5.2  
08_02_1012 + 23550314-23551504                                         28   5.2  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--A 414
           G+   L   V V+RDKTKV +T+D PFS                  DWLRV+AS  D   
Sbjct: 55  GKAGNLGESVTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNV 114

Query: 415 YELRYF 432
           YELRYF
Sbjct: 115 YELRYF 120



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +2

Query: 143 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG 244
           ++ F IDC  P +D I+++ + EK+L+E +KV G
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAG 54


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--A 414
           G+   L + V V RDKTKV +T+D  FS                  DWLRV+A+  D   
Sbjct: 54  GKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNV 113

Query: 415 YELRYF 432
           YELRYF
Sbjct: 114 YELRYF 119



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 143 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG 244
           ++ F IDC+ P ED I+++ + EK+L+E +KV G
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAG 53


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 114 ILPPFTPFLPVFWCNWAFLA 55
           ILPP  P LP+ W +W  LA
Sbjct: 152 ILPPSNPTLPMQWIDWEALA 171


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 108 PPFTPFLPVFWCNWAFLAAGF 46
           PP  P   +++C W F   GF
Sbjct: 270 PPIVPGTDMYYCTWGFFPVGF 290


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 108 PPFTPFLPVFWCNWAFLAAGF 46
           PP  P   +++C+W F   GF
Sbjct: 264 PPIVPGTDMYYCSWGFFPMGF 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,676,567
Number of Sequences: 37544
Number of extensions: 211214
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)