Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120281.Seq
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    44   7e-05
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    31   0.50 
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    27   8.1  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   8.1  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +2

Query: 143 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKT 250
           +LKF ++C +P ED IL + + E +L E +KV GKT
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKT 55



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +1

Query: 259 SNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 432
           +N+V V   K+KV++ +++PFS                  DWLRVVA   + YE+RYF
Sbjct: 60  ANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 283 PWRRQRDCLGICFALNFDVFLQVFLEVTYV*DTILSGMRAVD 158
           PW R RD L     + FD+ L   LEV Y  D ILS    ++
Sbjct: 7   PWDRFRDWLHCICVVTFDLELGQALEVIYPGDAILSNTEKIN 48


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 146 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNT*AITLSSPGIRRKSLSPQTFLFQ 325
           ++F + C   A   +L      K++++ + ++GKTNT + +L +  I  + L    FLF+
Sbjct: 604 MEFVVRCDMSALQKVL-----YKHMQKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFLFE 658


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 143 NLKFTIDCTHPAEDSILDV 199
           +LKF ++C +P ED IL +
Sbjct: 20  HLKFNVECKNPVEDGILRI 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,118,464
Number of Sequences: 27780
Number of extensions: 186052
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)