Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120281.Seq
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    45   3e-05
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    45   3e-05
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    45   3e-05
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    45   4e-05
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   5.8  
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta...    27   5.8  

>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 146 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 247
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--A 414
           G+   L + V + R+K+K+ +TAD  FS                  DWLRV+A+  D   
Sbjct: 48  GKAGALGDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNL 107

Query: 415 YELRYF 432
           YELRYF
Sbjct: 108 YELRYF 113


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 146 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 247
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49



 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--A 414
           G+   L + V + R+K+K+ +TAD  FS                  DWLRV+A+  D   
Sbjct: 48  GKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNL 107

Query: 415 YELRYF 432
           YELRYF
Sbjct: 108 YELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 146 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 247
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49



 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--A 414
           G+   L + V + R+K+K+ +TAD  FS                  DWLRV+A+  D   
Sbjct: 48  GKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNL 107

Query: 415 YELRYF 432
           YELRYF
Sbjct: 108 YELRYF 113


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +2

Query: 146 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 247
           + F IDC+ P +D+IL++   EK+L+E +KV GK
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGK 51



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 241 GQNKYLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--A 414
           G+   L N V + R   K+ + A+  FS                  DWLRV+AS  D   
Sbjct: 50  GKAGALGNSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNV 109

Query: 415 YELRYF 432
           YE+RYF
Sbjct: 110 YEVRYF 115


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 249 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 130
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
           domain-containing protein simlar to AHM1 [Triticum
           aestivum] GI:6691467; contains Pfam profile PF00226:
           DnaJ domain
          Length = 311

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 153 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLAAGF 46
           N +  F    +P+ LPP  P    ++C W F   GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,993
Number of Sequences: 28952
Number of extensions: 168765
Number of successful extensions: 443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)