Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120278.Seq
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 30 0.43
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 29 0.57
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.3
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 27 2.3
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 4.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.0
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 9.3
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 9.3
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 9.3
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.3
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.9 bits (64), Expect = 0.43
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 594 SRFSVASSHNHFVGKQNERSVASAKSALAP 505
S FS + SHNH Q E+S +++K ++ P
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSKGSMLP 566
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +3
Query: 591 GSARLRKRAPRNGAVANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRRKN 758
G +++ KRA + + +AD+++ ++ S HS A+ ++G N + L +K+
Sbjct: 447 GGSQIEKRANESNNLQREIADLSEQIVELESKRNDLHS-ALLEMGGNLTSLLTKKD 501
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 318 LITKSGVIQLIMKSKLPYAIELQEWLL 398
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 515 ADLAEATDRSFCLPTK*LWLDATLKRLGKIAKTRAAKRRSGQPHGGHCARRDSQTQQP 688
A E TD +FC+ A + + GKI T ++ R G H CA + P
Sbjct: 269 AKKCEPTDSAFCV-------GAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNP 319
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 203 STSTASTNRRLSMPTKSTPCSR*R 274
++S +S RRL +P ++TP SR R
Sbjct: 540 NSSNSSGTRRLGLPQRATPASRER 563
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 706 RLWHSCGLLGLAITSCAMSAMRL--ATAPFRGARFRNLAEPFQRRVEPQSFRWQ 551
R W S L L +C M RL +P R +F N RRVE + F WQ
Sbjct: 1140 RGWSSVATLSL--DTCKMIEKRLWPTMSPLR--QFPNCPSEVIRRVEKKEFPWQ 1189
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 203 STSTASTNRRLSMPTKSTPCSR*RGKAGRPAVFAPTHSAHYQI 331
S+S++ ++ R S T S + + + RP VF T +HY I
Sbjct: 162 SSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNI 204
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 344 LNHARFGNEHCVWVQIQRVALLCHAIWSMVWIWSACSNVDLYLPSTW 204
L+ + FG +W + R L C +W V W V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLAC--VWYGVQAWIGGECVVLMIRSIW 167
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 121 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 246
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -1
Query: 590 VSASRRATIISLANKMSDRL--LPPNLRWH 507
V+ RR + ISLAN++S L PP+ R H
Sbjct: 683 VTEPRRISAISLANRVSQELGGNPPSARSH 712
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 547 LFANEMIVARRDAETARQDCE 609
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,991
Number of Sequences: 5004
Number of extensions: 70610
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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