Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120278.Seq
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 30 2.4
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 3.2
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 3.2
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 4.2
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 5.5
12_02_0634 + 21416205-21416954 28 7.3
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 9.7
03_05_0830 + 28034179-28035492 28 9.7
01_06_1510 - 37859664-37861319 28 9.7
>10_02_0110 - 5371536-5372882
Length = 448
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -2
Query: 340 ITPDLVMSTVCGCKY----SG-SPCFATLSGAWCGFGRHAQTSICTCRRRGHVLPVHNLH 176
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 175 ILNC-WRC 155
+N W C
Sbjct: 379 AMNLRWFC 386
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 546 FVCQRNDCGSTRR*NGSARLRKRAP 620
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 336 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 503
V+ ++ + + +EL+E E ++ Q+ ++AP+VE +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327
Query: 504 TVPTQIWRK 530
+ + W+K
Sbjct: 328 IMEEEKWKK 336
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 338 HARFGNEHCVWVQIQRVALLCHA 270
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 166 SLKY--VNCERAIRVHVDGKYKSTFEHADQIHTMLQ 267
+LKY V+C+R R+H+D K E D ++ LQ
Sbjct: 1514 ALKYPCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQ 1549
>12_02_0634 + 21416205-21416954
Length = 249
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 575 DATLKRLGKIAKTRAAKRRSGQPHGGHC 658
DAT +R G+++ AKRR+ + GG C
Sbjct: 131 DATGRRRGRVSGAFPAKRRADRGRGGSC 158
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 575 DATLKRLGKIAKTRAAKRRSGQPHGGHC 658
DAT +R G+++ AKRR+ + GG C
Sbjct: 49 DATGRRRGRVSGDFPAKRRADRGRGGSC 76
>03_05_0830 + 28034179-28035492
Length = 437
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Frame = +3
Query: 372 AIELQEWLLEEV--IPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKL---TVPTQI-WRKQ 533
AIEL +L V I + GKY + DT + +DD + L V T I W
Sbjct: 268 AIELSAEILANVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKTLEMGAVETLIVWENL 327
Query: 534 PIAHFVCQRNDCGST 578
+ +V + + G T
Sbjct: 328 DVNRYVLKNSATGET 342
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 302 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 394
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,425,616
Number of Sequences: 37544
Number of extensions: 532198
Number of successful extensions: 1634
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -