Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120278.Seq
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  30   2.4  
SB_43107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   5.6  
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)          29   5.6  
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.9  

>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 577

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 304 CKYSGSPCFATLSGAWCGFGRHAQ 233
           CKY   P +   SGAW  F RH Q
Sbjct: 6   CKYVRIPGYIAASGAWTSFPRHNQ 29


>SB_43107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 612 RAPRNGAVANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRRKNDPGPQPET 782
           R P N  +A R A++ +  + KP N  L         G  E  F R+  +  P+ E+
Sbjct: 61  RLPNNRVMAERRAELLRQRLTKPENEDLAVKYREVMEGYIEKGFARKLTEDEPRIES 117


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +3

Query: 252 PHHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC 425
           P +    + K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL 
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLI 375

Query: 426 -TGKYAPAVEMDTNDVIAKIDDLTQKLTVPTQIWRKQPI 539
                AP   + T  V+  +  LT  L V T +    P+
Sbjct: 376 PLHVLAPLQVVITLQVLTSLQVLT-SLQVLTSLQVLTPL 413


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 772  CGPGSFLRRRNANSLLPTSHTARLWHSCGLLGLAITSC 659
            C P  F    N++ +  T    R W SC + G  +T C
Sbjct: 4453 CNPAGFCWCVNSDGMEETGTRRRGWPSCAITGRPLTPC 4490


>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
          Length = 534

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -2

Query: 331 DLVMSTVCGCKYSGSPCFATLSGAW-C----GFGRHAQTSICTCRRRGHVLPVHNLHILN 167
           +L +ST+C  ++SGS     LS  W C      G  A ++I  CR  G    V NL    
Sbjct: 332 NLALSTICLSRHSGSVDILALSTFWLCRHFGSVGILALSTIWLCRHSG---SVDNLDQST 388

Query: 166 CWRC 155
            W C
Sbjct: 389 FWLC 392


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 639 WPLRRFAARVFAILPSRFSVASS 571
           WPL  FA ++  +L   FSVASS
Sbjct: 39  WPLGDFACKLHGVLVMAFSVASS 61


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 313  VCGC-KYSGSPCFATLSGAWCGFGRHAQTSICTCRRRGHVL 194
            VCGC             G W  FG  A+   C  R+RG VL
Sbjct: 1011 VCGCCDVCAKTVTQKCGGYWGQFGTCAEGLSCVLRKRGQVL 1051


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 207 RRRQVQIDV*ACRPNPHHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSK 362
           RRR +Q D+   R  P   P   A  G P ++ PH       G   L +K K
Sbjct: 536 RRRHLQNDILNGRKVPEEKPSETATNGPP-FICPHANCGRSFGARHLYLKHK 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,297,018
Number of Sequences: 59808
Number of extensions: 592734
Number of successful extensions: 1623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)