Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120278.Seq
         (785 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    28   0.38 
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    27   0.50 
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    26   1.1  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   2.0  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   4.6  
AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450 CY...    24   4.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   8.1  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   8.1  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 577  RDAETARQDCENARRETAQWPTAW 648
            RDA++  + CE A+R TAQ   AW
Sbjct: 1051 RDADSWSRICEGAKRITAQLQRAW 1074


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 507 VPTQIWRKQPIAHFVCQRNDCGSTRR*NGSAR 602
           + T +WR+    H++C  N CG   + NG  R
Sbjct: 126 ISTPLWRRDGTGHYLC--NACGLYHKMNGMNR 155


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 577  RDAETARQDCENARRETAQWPTAW 648
            RDAE+  + CE A+R TA    AW
Sbjct: 988  RDAESWSRICEAAKRITASLQQAW 1011


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = +3

Query: 297 YLHPHTVLITKSGVIQLIMKS---KLPYAIELQEWLLE---EVIPQVLCTGKYAPAVEMD 458
           YL    +L+T S V+ + + +   + P    +  W+     E++P+VLC  +     E  
Sbjct: 305 YLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVHRVFIELLPKVLCIERPKKEDEPS 364

Query: 459 TNDVIAKIDDLTQKLTVPTQI 521
            ND     D LT    VP  +
Sbjct: 365 DNDDQTPTDVLTDVFQVPPDV 385


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 470 YCQ-N*RSDAKIDGANADLAEATDRSFCLPTK*LWLDATLKRLGKIA-KTRAAKRRSGQP 643
           YC+ N   DA  +G   + +   D+     T    +   L R+G+   K  + + RS QP
Sbjct: 692 YCEYNSLKDADGNGEGTEESTYRDKDESFDTPEEQVLHFLARVGRPGWKWMSVRPRSPQP 751

Query: 644 HGGH 655
           H GH
Sbjct: 752 HHGH 755


>AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450
           CYP6P3 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 189 TGNTCPRRRQVQIDV*ACRPNPHHAPD 269
           T +  P+R  VQI   A + +P H PD
Sbjct: 396 TKHVIPKRTLVQIPAYAIQRDPDHYPD 422


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 529 SNRSLILFANEMIVARRDAETARQDCENARRETAQWPT 642
           SN   I FA   ++ R  A++ RQ+  + R    +W T
Sbjct: 201 SNHVYIRFAVGELLQRPAADSRRQEGPSTRESGTRWRT 238


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -1

Query: 599 CRAVSASRRAT-IISLANKMSDRL--LPPNLRWHR-QFLRQIVNFGNNII 462
           CR    SR    + + A+++++ L  L PN R  + +  RQ++N GN+II
Sbjct: 734 CRKQHHSRHLERVANKASRITNALTCLMPNKRGPKSRSRRQLINVGNSII 783


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,072
Number of Sequences: 2352
Number of extensions: 19324
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)