Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120277.Seq
         (791 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24729 Cluster: GP16 protein; n=12; Nucleopolyhedroviru...   176   5e-43
UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...   126   5e-28
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    77   4e-13
UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep: ...    71   4e-11
UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: G...    68   3e-10
UniRef50_A1YJ03 Cluster: Gp16; n=5; Nucleopolyhedrovirus|Rep: Gp...    50   9e-05
UniRef50_Q91BA2 Cluster: Calyx protein; n=2; Nucleopolyhedroviru...    38   0.22 
UniRef50_Q8WQX0 Cluster: Serine proteinase inhibitor serpin-2; n...    37   0.50 
UniRef50_Q9FXH1 Cluster: F6F9.22 protein; n=4; core eudicotyledo...    34   3.6  
UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2; Lyman...    33   6.2  
UniRef50_A5UN47 Cluster: Helicase, UvrD/REP family; n=1; Methano...    33   8.2  

>UniRef50_P24729 Cluster: GP16 protein; n=12;
           Nucleopolyhedrovirus|Rep: GP16 protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 106

 Score =  176 bits (429), Expect = 5e-43
 Identities = 84/89 (94%), Positives = 85/89 (95%)
 Frame = +3

Query: 9   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 188
           MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM
Sbjct: 1   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 60

Query: 189 LSNLQNNTIRTWDAVVKNGKKIPISTKKI 275
           LSNLQNNTIRTWDAVVKNGKKI    +KI
Sbjct: 61  LSNLQNNTIRTWDAVVKNGKKISNLDEKI 89


>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score =  126 bits (305), Expect = 5e-28
 Identities = 55/57 (96%), Positives = 57/57 (100%)
 Frame = +3

Query: 510 PSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNYLCYFY 680
           PSKHRKMINDAGGSCHNTVKYMVDIYGA+VL+LRTPCSFADQLLSTFIANNYLCYFY
Sbjct: 41  PSKHRKMINDAGGSCHNTVKYMVDIYGAAVLVLRTPCSFADQLLSTFIANNYLCYFY 97



 Score = 87.4 bits (207), Expect = 4e-16
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = +1

Query: 391 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFT 507
           MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFT
Sbjct: 1   MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFT 39


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 77.4 bits (182), Expect = 4e-13
 Identities = 42/66 (63%), Positives = 47/66 (71%), Gaps = 11/66 (16%)
 Frame = +3

Query: 510 PSKHRKMINDAGG------SC-----HNTVKYMVDIYGASVLILRTPCSFADQLLSTFIA 656
           PSKHRKMIND G       SC     ++TVKYMVDIYGA+VL LR P  F+DQLL+TF A
Sbjct: 41  PSKHRKMINDIGNPACNPPSCSFPPSNSTVKYMVDIYGAAVLALRCPSLFSDQLLTTFTA 100

Query: 657 NNYLCY 674
           NNYL Y
Sbjct: 101 NNYLSY 106



 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 31/39 (79%), Positives = 33/39 (84%)
 Frame = +1

Query: 391 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFT 507
           M P NNVMFDDASV+WID DYIYQN KMPL  FQQLLF+
Sbjct: 1   MTPNNNVMFDDASVMWIDADYIYQNSKMPLSTFQQLLFS 39


>UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep:
           Orf125 - Trichoplusia ni SNPV
          Length = 95

 Score = 70.5 bits (165), Expect = 4e-11
 Identities = 33/89 (37%), Positives = 53/89 (59%)
 Frame = +3

Query: 9   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 188
           MN+ A   + LV YL + G +++EL  IK +L  +YE+++  F  +V ++   + DT   
Sbjct: 1   MNYSAVTLVLLVAYLWHTGSISHELAAIKKLLTFIYEAIQDRFDAIVYDMAKFRNDTMFY 60

Query: 189 LSNLQNNTIRTWDAVVKNGKKIPISTKKI 275
           L+ +QN T  T+D VV NG KI +  +KI
Sbjct: 61  LNRIQNTTKITYDLVVTNGNKIDVINQKI 89


>UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: Gp16
           - Ecotropis obliqua NPV
          Length = 98

 Score = 67.7 bits (158), Expect = 3e-10
 Identities = 32/89 (35%), Positives = 51/89 (57%)
 Frame = +3

Query: 9   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 188
           MN+ A   +    Y+   G L++E++ +K +LVVMY+ +E  FSN+ +EI  LK  TF +
Sbjct: 1   MNYSAICLVIFAAYMWQTGSLSHEIRAVKHLLVVMYDMIESKFSNLHNEISFLKNGTFRL 60

Query: 189 LSNLQNNTIRTWDAVVKNGKKIPISTKKI 275
              LQN+T  +   ++ N  KI +   KI
Sbjct: 61  FEQLQNSTKHSIKLIMNNSNKIDVLNNKI 89


>UniRef50_A1YJ03 Cluster: Gp16; n=5; Nucleopolyhedrovirus|Rep: Gp16
           - Spodoptera frugiperda nuclear polyhedrosis virus
           (SfNPV)
          Length = 97

 Score = 49.6 bits (113), Expect = 9e-05
 Identities = 27/89 (30%), Positives = 41/89 (46%)
 Frame = +3

Query: 9   MNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMM 188
           MNF     + L  YL YA  + NE+  +K  L+++YE+    F +V   +          
Sbjct: 2   MNFSGAALVLLAAYLWYANSMANEINLVKKFLLLIYETTTTKFDDVTKLMSDYHETIVQN 61

Query: 189 LSNLQNNTIRTWDAVVKNGKKIPISTKKI 275
           L  L N T  + D +V N +KI +   KI
Sbjct: 62  LEKLHNMTKHSIDLIVINSRKIDVINGKI 90


>UniRef50_Q91BA2 Cluster: Calyx protein; n=2;
           Nucleopolyhedrovirus|Rep: Calyx protein - Spodoptera
           litura multicapsid nucleopolyhedrovirus (SpltMNPV)
          Length = 344

 Score = 38.3 bits (85), Expect = 0.22
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 510 PSKHRKMIND--AGGSCH-NTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNY 665
           P +HR+ + D     +C  +  K  VD+ G S+L  R+ C+  D LL+ F+A  Y
Sbjct: 49  PPRHRRCLGDFRCSHTCRFDNNKVFVDLLGLSILCSRSNCNICDYLLTAFVAEVY 103


>UniRef50_Q8WQX0 Cluster: Serine proteinase inhibitor serpin-2; n=4;
           Ixodidae|Rep: Serine proteinase inhibitor serpin-2 -
           Rhipicephalus appendiculatus (Brown ear tick)
          Length = 380

 Score = 37.1 bits (82), Expect = 0.50
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 15  FWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLS 194
           F++ FSI     +  AG  NN  ++I   L V  E + KHF++ +  +     D  + ++
Sbjct: 33  FYSPFSIAAALSMALAGARNNTAKQIADALHVNSEEVHKHFASFMSRLSGFAPDVKLHVA 92

Query: 195 N---LQNNTIRTWDA 230
           N    +  + R+W A
Sbjct: 93  NRMYSEQTSFRSWKA 107


>UniRef50_Q9FXH1 Cluster: F6F9.22 protein; n=4; core
           eudicotyledons|Rep: F6F9.22 protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 894

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 447 GLHLSKFKNAFASVSTTFVHHPS----KHRKMINDAGGSCHNTVKYMVDIYGASVLILRT 614
           G+H  KF  AF  +S++     +    K+ +M  D    CH+T KY+   YG  +L+  T
Sbjct: 822 GIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRD----CHDTAKYVSKRYGCDILLEDT 877

Query: 615 PC 620
            C
Sbjct: 878 RC 879


>UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2;
           Lymantria dispar MNPV|Rep: Polyhedral envelope protein -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 312

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +3

Query: 513 SKHRKMIND-------AGGSCHNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNY 665
           ++H+K  ND        GGS  +  +  VD+YG   L  RT  + AD L + F+A  Y
Sbjct: 49  TRHKKCWNDFRGGGGGGGGSRVDGTRAFVDLYGLGYLCNRTNSTLADYLCTLFVAEAY 106


>UniRef50_A5UN47 Cluster: Helicase, UvrD/REP family; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Helicase,
           UvrD/REP family - Methanobrevibacter smithii (strain PS
           / ATCC 35061 / DSM 861)
          Length = 661

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 IDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKIPISTK 269
           +  LKTD  + L NL++N + T   + KNG++  I TK
Sbjct: 481 VQELKTDANVELLNLEHNRLETLKNIEKNGERYVIPTK 518


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,780,098
Number of Sequences: 1657284
Number of extensions: 14068778
Number of successful extensions: 38972
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38962
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)