Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120277.Seq
         (791 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77050-1|CAA54342.1|  260|Drosophila melanogaster gag-like polyp...    31   1.4  
X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element prot...    29   5.5  
U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag p...    29   5.5  
S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.        29   5.5  
BT003507-1|AAO39511.1|  807|Drosophila melanogaster RE34115p pro...    29   5.5  
AE013599-236|AAM70834.1|  807|Drosophila melanogaster CG15236-PB...    29   5.5  
AE013599-235|AAF57401.2|  807|Drosophila melanogaster CG15236-PA...    29   5.5  
X68130-1|CAA48237.1|  943|Drosophila melanogaster protein ( D.me...    29   9.6  
AE014296-3238|AAF49100.3| 1736|Drosophila melanogaster CG8334-PA...    29   9.6  

>X77050-1|CAA54342.1|  260|Drosophila melanogaster gag-like
           polypeptide protein.
          Length = 260

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 185 DVEQLAK*HDSNVGRSCKKWQKNTNLDEKN*RAINKKRGS*QPA*RSIN 331
           DV      HD+ + +  KKW++NTN   K  R ++K     +P  ++ N
Sbjct: 98  DVRPRFSSHDTAIQKRLKKWRRNTNKIPKKGRTVSKNNVKPRPITKTSN 146


>X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element
           protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 HDSNVGRSCKKWQKNTNLDEKN*RAINKKRGS*QPA*RSIN 331
           HD+ + +   KW++NTN   K  R   K     +PA R+ N
Sbjct: 382 HDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPRPAHRTSN 422


>U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag
           protein protein.
          Length = 921

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 HDSNVGRSCKKWQKNTNLDEKN*RAINKKRGS*QPA*RSIN 331
           HD+ + +   KW++NTN   K  R   K     +PA R+ N
Sbjct: 767 HDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPRPAHRTSN 807


>S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 HDSNVGRSCKKWQKNTNLDEKN*RAINKKRGS*QPA*RSIN 331
           HD+ + +   KW++NTN   K  R   K     +PA R+ N
Sbjct: 382 HDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPRPAHRTSN 422


>BT003507-1|AAO39511.1|  807|Drosophila melanogaster RE34115p
           protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 717 NVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*P 562
           NV+  +  IGD     T NCLQ  C  T   T         +   CPP + P
Sbjct: 750 NVLGKLYKIGDILPQDTGNCLQ--CICTDAVTPDEMPSVTCSPHNCPPLVLP 799


>AE013599-236|AAM70834.1|  807|Drosophila melanogaster CG15236-PB,
           isoform B protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 717 NVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*P 562
           NV+  +  IGD     T NCLQ  C  T   T         +   CPP + P
Sbjct: 750 NVLGKLYKIGDILPQDTGNCLQ--CICTDAVTPDEMPSVTCSPHNCPPLVLP 799


>AE013599-235|AAF57401.2|  807|Drosophila melanogaster CG15236-PA,
           isoform A protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 717 NVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*P 562
           NV+  +  IGD     T NCLQ  C  T   T         +   CPP + P
Sbjct: 750 NVLGKLYKIGDILPQDTGNCLQ--CICTDAVTPDEMPSVTCSPHNCPPLVLP 799


>X68130-1|CAA48237.1|  943|Drosophila melanogaster protein (
           D.melanogaster DNA sequenceof Het-A transposable element
           9D4. ).
          Length = 943

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 209 HDSNVGRSCKKWQKNTNLDEKN*RAINKKRGS*QPA 316
           HD+ + +   KW++NTN   K  R  +K     +PA
Sbjct: 789 HDTAIQKRLNKWRRNTNKIPKKGRIASKDNAKPRPA 824


>AE014296-3238|AAF49100.3| 1736|Drosophila melanogaster CG8334-PA
           protein.
          Length = 1736

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +2

Query: 578 GHLRSVRFDFANALLVCRPVAEHIYCKQLFVLLLPSSPI 694
           GH  SVRFD  + L +  PV  +IY + L +LL  S PI
Sbjct: 840 GH-ESVRFDPFSLLSLPLPVENYIYFEVLVILLDGSVPI 877


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,250,222
Number of Sequences: 53049
Number of extensions: 669518
Number of successful extensions: 1927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)