Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120277.Seq
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    29   3.8  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
 Frame = -2

Query: 331 VY*TLSRLLTTPFFVNSTLIFFVEIGIF-LPFFTTASHVRIVLFCKLLNI--------IN 179
           +Y T S +LT    +N++ +F +   I  L         R  ++C LL+I        +N
Sbjct: 414 LYETASNMLTVDHLLNASAVFGISSIISRLTNIGVIPTQRADVWCTLLDINETKWRDYLN 473

Query: 178 VSVLRESISSTTLE----KCFSIDSYMTT 104
           + VL    S   LE    +C   DSYMTT
Sbjct: 474 LDVLASHSSDRQLEVDIPRCHQYDSYMTT 502


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 232 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 83
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -2

Query: 277 LIFFVEIGIFLPFFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSI 98
           L FFV   + L F  TAS + I+L   +L +  + V + S+S    +  F ID++ T S+
Sbjct: 2   LFFFVGSFLTLLFAITASFLNIMLLFSILYLKRIPV-KSSMSLIYYK--FGIDAFYTLSL 58

Query: 97  DFISCSSLF 71
            F     +F
Sbjct: 59  FFARLYLIF 67


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = -1

Query: 254 YFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 117
           +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 37  FFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = -1

Query: 254 YFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 117
           +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 37  FFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,485
Number of Sequences: 27780
Number of extensions: 366766
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)