Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120276.Seq
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 34 0.14
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 33 0.25
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 33 0.33
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 3.1
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 29 3.1
02_03_0277 + 17218693-17219188,17219278-17220269 29 5.4
08_01_0205 - 1642769-1642783,1642923-1643555,1643656-1643737,164... 28 9.5
08_01_0168 - 1385439-1385979,1386081-1387438 28 9.5
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 28 9.5
>09_04_0496 +
18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +2
Query: 446 LHLSKFKNAFASVSTTFVHHPSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTP 613
LH K AF +ST P + K + G CHN VK + IYG + L+L P
Sbjct: 516 LHSEKLAIAFGLISTA-PGTPIRIAKNLRVCG-DCHNAVKLLSKIYGRNPLLLLAP 569
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 214 RIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 77
R + +L I +++L +S +CF YM TSI FI C+
Sbjct: 422 RSMFSTELKTKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 181 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 77
I +++L +S +CF YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 120 MEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTC 278
+E H +V+D S KTD +LS+ + T+R WD K K+ +TC
Sbjct: 1238 LEGHQDDVLDLTWS-KTD--QLLSSSMDKTVRLWDTTTKACLKVFAHNDYVTC 1287
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 117 SMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTC 278
S+E H +V+D S+ + ++LS+ + T+R WD K K+ +TC
Sbjct: 527 SLEGHLDDVLDLAWSMYSQ--LLLSSSMDKTVRLWDTEAKACLKLFPHNDYVTC 578
>02_03_0277 + 17218693-17219188,17219278-17220269
Length = 495
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 446 LHLSKFKNAFASVSTTFVHHPSKHRKMINDAG 541
LHL+K +A V TFVH R++I G
Sbjct: 24 LHLAKLLHARGGVRVTFVHSERNRRRVIRSHG 55
>08_01_0205 -
1642769-1642783,1642923-1643555,1643656-1643737,
1644474-1644514
Length = 256
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 655 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTR 545
+C+ A QL GK+ S ++ SV + + F ++ TR
Sbjct: 196 ICSGIAAQLFGKKNELSNQESVASVTIPYSFPKLWTR 232
>08_01_0168 - 1385439-1385979,1386081-1387438
Length = 632
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 157 SISSTTLEKC--FSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQMLNVAQK 11
SI S T E FS++ MT ++D+ S SS+ + TK N++ K
Sbjct: 180 SIVSVTNESLPDFSLNGSMTATVDYNSSSSILSVKLWINDTTKPPYNLSDK 230
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 147 DEIDSLKTDTFMMLSNLQNNTIR 215
+EI+ LK+D + S LQNNT++
Sbjct: 170 EEIERLKSDNAALSSELQNNTLK 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,768
Number of Sequences: 37544
Number of extensions: 353339
Number of successful extensions: 931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -