Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120276.Seq
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3449| Best HMM Match : DUF465 (HMM E-Value=9.2)                     31   1.0  
SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)                     31   1.0  
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     30   1.8  
SB_13571| Best HMM Match : SNURF (HMM E-Value=2.8)                     29   5.5  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_35409| Best HMM Match : Guanylate_cyc (HMM E-Value=1.7e-17)         28   9.7  
SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3)                        28   9.7  

>SB_3449| Best HMM Match : DUF465 (HMM E-Value=9.2)
          Length = 128

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 108 MYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 248
           M E ++ H  N +D +D +  +    ++NL NN+ +T + + + GKK
Sbjct: 1   MIEEID-HLDNEIDNLDLVNKELSKYINNLHNNSAQTANKIDEVGKK 46


>SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)
          Length = 656

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 108 MYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 248
           M E ++ H  N +D +D +  +    ++NL NN+ +T + + + GKK
Sbjct: 577 MIEEID-HLDNEIDNLDLVNKELSKYINNLHNNSAQTANKIDEVGKK 622


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = +3

Query: 66  LNNELQE----IKSILVVMYESMEKHFSN----VVDEIDSLKTDTFMMLSNLQNNTIRTW 221
           LNN + E    +K I V MY  ++K  +       DE+++   D  + L + QNNT    
Sbjct: 507 LNNTVYEGYKFVKPIKVSMYYDVKKLVNANRRVASDEVEAGDIDPVLYLWDKQNNTCFNG 566

Query: 222 DAVVKNGKKISISTKK 269
           + +VK  +K+++  K+
Sbjct: 567 EVLVKQKEKVTLPIKR 582


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 54  YAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFM 182
           +  HLN + +EI+ + V + +  +  F N+V+E+ S++ +  M
Sbjct: 655 FKNHLNEKEKEIEVLKVEIMKLKKHQFDNLVEEVSSVRAELAM 697


>SB_13571| Best HMM Match : SNURF (HMM E-Value=2.8)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 488 TTFVHHPSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNYLC 667
           TT++HHP  H K+   A    +     +      ++ I R    F   +++T   N+Y  
Sbjct: 37  TTYIHHPQDHLKVSFTAREDSNEVFVLLNGSRQLNIPITRDCTEFTRVIITTKPRNSY-- 94

Query: 668 YFY 676
           YFY
Sbjct: 95  YFY 97


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 641 CSATGRQTSKAFAKSKRTLRKCPPCI*PCYDTIRPHR 531
           C  T R         + TLR C   + PC  T+RPHR
Sbjct: 240 CRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLRPHR 276


>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 506 DGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHI 384
           D E+K L  L  H    +  ++ DP+NR+    N+ ++LH+
Sbjct: 181 DSEEKHLDELIEHAREELTSVKTDPENRKYPFVNLHKKLHL 221


>SB_35409| Best HMM Match : Guanylate_cyc (HMM E-Value=1.7e-17)
          Length = 577

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +3

Query: 45  YLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           +L +   + ++L+  KS++  +++ +  +FS+VV  +D     T M +  L N+     D
Sbjct: 413 FLSHFSSVADQLKRGKSVVPELFDEVTIYFSDVVAFMDLASDSTPMEIVTLLNDLYIALD 472

Query: 225 AVVKN 239
            ++ N
Sbjct: 473 KILAN 477


>SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3)
          Length = 256

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 247 FLPFFTTASHVRI-VLFCKLLNIINVSVLRESI 152
           FLPF  T +H     +FC++L +  ++ L +SI
Sbjct: 224 FLPFVMTTAHALTKAMFCEVLLLFTLNTLEQSI 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,412,582
Number of Sequences: 59808
Number of extensions: 451376
Number of successful extensions: 1180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)