Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120276.Seq
         (778 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF519356-1|ABP68465.1|  500|Anopheles gambiae LRIM1 protein.           26   1.5  
EF519351-1|ABP68460.1|  486|Anopheles gambiae LRIM1 protein.           26   1.5  
EF519362-1|ABP68471.1|  506|Anopheles gambiae LRIM1 protein.           24   4.6  
EF519354-1|ABP68463.1|  506|Anopheles gambiae LRIM1 protein.           24   4.6  
EF519353-1|ABP68462.1|  470|Anopheles gambiae LRIM1 protein.           24   4.6  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   4.6  
EF519360-1|ABP68469.1|  499|Anopheles gambiae LRIM1 protein.           24   6.0  
EF519355-1|ABP68464.1|  506|Anopheles gambiae LRIM1 protein.           24   6.0  

>EF519356-1|ABP68465.1|  500|Anopheles gambiae LRIM1 protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  LQ+   ++ + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLQQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>EF519351-1|ABP68460.1|  486|Anopheles gambiae LRIM1 protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  LQ+   ++ + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLQQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>EF519362-1|ABP68471.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  L++   ++ + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLKQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>EF519354-1|ABP68463.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  L++   ++ + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLKQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>EF519353-1|ABP68462.1|  470|Anopheles gambiae LRIM1 protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  L++   ++ + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLKQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 216 TWDAVVKNGKKISISTK 266
           TWDA+ K+ +K ++STK
Sbjct: 80  TWDALQKHHQKTTMSTK 96


>EF519360-1|ABP68469.1|  499|Anopheles gambiae LRIM1 protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  LQ+    + + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>EF519355-1|ABP68464.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 66  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 224
           L+  LQ+    + + + + E+    ++  I     + ++   ++QNN IR WD
Sbjct: 408 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,099
Number of Sequences: 2352
Number of extensions: 16271
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)