Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120276.Seq
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.60 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 577 HLRSVRFDFANALL-VCRPVAEHIYCKQLFVLLLPSSPITITLEITF 714
           H RS R  F    +   R VA H Y K+L + L+    +  T+ +TF
Sbjct: 132 HYRSKRRGFVYYTMGQIREVARHFYHKELQIELVREEILFDTVHVTF 178


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 270 IFSSRWIFFC 241
           IF +RWIF C
Sbjct: 61  IFGTRWIFSC 70


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 180 MMLSNLQNNTIRTWDAVVKNGKKI 251
           M+ +    N +  WD  VKN + I
Sbjct: 76  MIATKAMKNDVILWDFFVKNARMI 99


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 180 MMLSNLQNNTIRTWDAVVKNGKKI 251
           M+ +    N +  WD  VKN + I
Sbjct: 50  MIATKAMKNDVILWDFFVKNARMI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,276
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)