Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120274.Seq
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 4.5
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 4.5
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 26 5.9
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 5.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.9
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 26 5.9
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 5.9
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 7.9
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 81 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 230
+A N +E ++ ND N N PT + VV ++E +ASN +++
Sbjct: 24 QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSA 73
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 84 ASFDNGYSE-FCDKQQPNDYLN 146
AS+D+ E +CDK P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -1
Query: 171 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 70
H WD C+ + + +V Y KT N + TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -1
Query: 222 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 103
K ++ S ++ C + +WDC + WA + LN
Sbjct: 71 KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 21 QTTMTQINFNASYTSAPTPSRASF 92
Q + + +FNA+ APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 210 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 70
L Q++C++L D Y S S V HK + C TT AS
Sbjct: 61 LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 460 SQSVVGQFNKNKLKPESRKAQFKAV 534
SQS+V NK KL P SRK F +
Sbjct: 312 SQSIVLLKNKKKLLPLSRKGTFAVI 336
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 48 NASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLA 227
N + PT + +F+N S D +QP+ + NN + S+ +++S L+
Sbjct: 486 NQRCPATPTRNPFAFENTVSIHMDGRQPSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLS 545
Query: 228 SVNSLTDDNI 257
++LT +
Sbjct: 546 FPSALTSSKV 555
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 361 SSAYNAESFEQSVGVNQPSAAGTKRKLDEYLDDSQSVVGQFNKNKLKPESRKAQ 522
S+ Y+ + +S G+N + +KRK D +DD Q+ + K +L +S AQ
Sbjct: 781 SAVYDTSA--ESSGINVSNTRYSKRKSDFQVDDQQA-DDESPKKRLSIDSSSAQ 831
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 525 QSCASLEQRINHNTNICTVASTQEITHYFT 614
Q CASL + + IC S + HYFT
Sbjct: 299 QECASLGKNSQLSEIICAGYSALNLIHYFT 328
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 549 RINHNTNICTVASTQEITHYFTNDFAPY 632
+IN N IC VA+ Q DFAP+
Sbjct: 654 KINDNKKICDVAALQFSDAVTAVDFAPF 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,722
Number of Sequences: 5004
Number of extensions: 55796
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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