Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120274.Seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.67 
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             31   1.2  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.0  
SB_2524| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)              28   6.2  
SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)             28   6.2  
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   8.3  
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 165  AWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 67
            AW  YN + ++W VVY KT   + R  L    E
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 177 RLHPAWDCYNNSNSRWAVVYHKTL 106
           RLH  W C ++  S  A++YH TL
Sbjct: 800 RLHHTWSCLHHQYSSSAIMYHSTL 823


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 367  AYNAESFEQSVGVNQPSAAGTKRKLDEYLDDSQSVVGQFNKNKLKPESRKAQFKAVQALS 546
            A+  +++  SV  N P++     K+     DS S+VG  + +K   + R         L 
Sbjct: 1695 AFTQQNYTASVRENSPTSTSVV-KVSASDRDSYSIVGGKDSDKFSIDQRSGIISTADVLD 1753

Query: 547  RELIT 561
            REL++
Sbjct: 1754 RELVS 1758


>SB_2524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = -2

Query: 641 THQIRRKIISKIMRNFLS*SDRANVRVVINSLLKACTALNCAFLDSGFNLFLLNWPTTLC 462
           TH++ + I S+ MR   S   RA  +   N+  KA  A + +   S     L  +P  LC
Sbjct: 117 THRLEQAIKSENMRKLRS---RAGDKATSNAKEKALNAAHGSSTPSPLTTAL--YPRALC 171

Query: 461 ESSKYSSSFRL 429
           E      SFRL
Sbjct: 172 EDDNLVCSFRL 182


>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
          Length = 624

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 432 FSSSCRWLVHTNRLLKRFRIISRTG 358
           F  S RWL+  NRL +  +++SR G
Sbjct: 190 FPESARWLIANNRLDEALQVLSRYG 214


>SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)
          Length = 391

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 545 LKACTALNCAFLDSGFNLFLLNWPTTLCESSKYSSSFRLVPAADGW 408
           L+A  + NC  +   F L +L W + +C    Y  +FRLVP  DG+
Sbjct: 136 LRARQSNNCCRI---FTL-VLTWLSAMCFYVPYFITFRLVPFRDGY 177


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 93  DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 215
           DNG    C  ++  D + +   PTP G   V SD    AAS
Sbjct: 581 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 617


>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 93  DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 215
           DNG    C  ++  D + +   PTP G   V SD    AAS
Sbjct: 218 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,592,004
Number of Sequences: 59808
Number of extensions: 440707
Number of successful extensions: 1100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)