Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120274.Seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   3.2  
Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF036703-2|AAB88557.3|  535|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 510 KKSTIQSCASLEQRINHNTN-----ICTVASTQEITHYFTNDFAPYLMRFDDNDYNSNRF 674
           + +T+ S AS  +R+ +        +C +A+ Q I + F  D AP+ +      Y +N+F
Sbjct: 461 RSNTLSSSASSVKRVRNRLGWSIIAVCLIAAAQIIPYVFLLDVAPHDIETCKGFYKANKF 520

Query: 675 SDHMV 689
              ++
Sbjct: 521 MGEVI 525


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 126  QPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNI*WNVCS 275
            Q +   +YY  P P  A+T  ++S   A S  L     +T   I W+  S
Sbjct: 4063 QVDSKYDYYRRPAPKNAETTFTESNADAFSLALQEAGEVTSSGI-WSTVS 4111


>Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical
           protein F18C12.4 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 579 VASTQEITHYFTNDFAPYLMRFDDNDY 659
           V+++Q+++  F  DF P L    DNDY
Sbjct: 145 VSTSQKLSETFERDFDPVLEGMSDNDY 171


>Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical
           protein C09G1.4 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 GWFTPTDCSKDSAL*AELGDGSPQQAA 333
           G+ TP D   DS + A+   GSP+ AA
Sbjct: 28  GYLTPQDSDTDSGISADCDQGSPRAAA 54


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 525 QSCASLEQRINHNTNICTV-ASTQEITHYFT 614
           +S + + +++NHN NIC V A     TH  T
Sbjct: 207 KSASVINEKVNHNCNICVVYAPVAATTHVCT 237


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 525 QSCASLEQRINHNTNICTV-ASTQEITHYFT 614
           +S + + +++NHN NIC V A     TH  T
Sbjct: 207 KSASVINEKVNHNCNICVVYAPVAATTHVCT 237


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = -3

Query: 475 PPHFVNRPSIRPASV*FQLPMVGSHQQTAQKIPHYKQNWAMVLRNRQLKGFRIISRTNC 299
           PP +  +P   P      +P  G +    Q+ P+Y Q   +V+   +  G R     NC
Sbjct: 9   PPPYTQQPGYPPPGSAGYVPQQGGYYPQGQQGPYYPQQPHVVVVEERRGGGRSGGSDNC 67


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 479 WPTTLCESSKYSSSFRLVPAADGWFTPTDCSKD 381
           +P   C+  K++   +LVP   GW+    C +D
Sbjct: 314 YPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRD 346


>AF036703-2|AAB88557.3|  535|Caenorhabditis elegans Hypothetical
           protein T11F8.4 protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 391 AQKIPHYKQNWAMVLRNRQLKGFRIIS-RTNCFSEIISGLEQTFHYMLSSVNELTLAKKF 215
           A K+  Y++    VL+  +++  R +S + N    + SGLE  + +++ ++  + L K +
Sbjct: 49  AMKMEKYQEGNESVLKG-EVEVLRALSGQKNAIQLLDSGLEPDYRFIVMTLCGMDLQKVY 107

Query: 214 EAAAVSLSDTTV 179
                  SD+TV
Sbjct: 108 NLLKGQFSDSTV 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,073
Number of Sequences: 27780
Number of extensions: 324837
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)