Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120274.Seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr...    29   2.2  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   3.9  
At1g30750.1 68414.m03758 expressed protein                             28   6.8  
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put...    27   8.9  
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    27   8.9  

>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 498

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 352 PSPSSAYNAESFEQSVGVNQPSAAGTKRKLDEYLDDSQSVVGQFNK-NKLKPESRKAQFK 528
           PSPS +  AE      G       G KR+ +E  D+ +   G+ NK N  KP      + 
Sbjct: 240 PSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDEEEEGEGEGNKSNNTKPPEPPKDYI 299

Query: 529 AVQA 540
            V+A
Sbjct: 300 HVRA 303


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 174 LHPAWDCYNNSNSRW 130
           L  AWDCY ++N RW
Sbjct: 423 LSTAWDCYMDANDRW 437


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 346 GEPSPSSAYNAESFEQSVGVNQPSAAGTKRKLDEYLDDSQSVVGQFNKNKL 498
           G+PS SS+ N    +   G NQPS+ G  + +      S S   Q   N+L
Sbjct: 125 GQPSTSSSLN----QPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTNRL 171


>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +3

Query: 189 SDSETAAASNFLASVNSLTDDNI*WNVCSRPL--IISEKQ---LVLLIIRNPLSC 338
           ++S T     FLAS+ SL+  N+ WN  + PL  ++ +++   L L I  NP  C
Sbjct: 441 NNSFTGGVPEFLASMKSLSIINLNWNDLTGPLPKLLLDREKNGLKLTIQGNPKLC 495


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 165 PDGADTVVSDSETAAASNFLASVNS 239
           PD A+ +++DSE  A +  L S+NS
Sbjct: 761 PDDAEELLADSEDMAQTGILVSINS 785


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,011
Number of Sequences: 28952
Number of extensions: 290222
Number of successful extensions: 874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)