Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120273.Seq
(777 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 87 3e-16
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 47 5e-04
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 46 0.001
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 45 0.002
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 42 0.013
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 41 0.040
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 40 0.092
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 39 0.12
UniRef50_Q16SQ5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.28
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 38 0.37
UniRef50_UPI0000DD86C1 Cluster: PREDICTED: similar to double hom... 36 1.5
UniRef50_A6SJW8 Cluster: Predicted protein; n=1; Botryotinia fuc... 35 2.6
UniRef50_UPI000023F3F3 Cluster: hypothetical protein FG08939.1; ... 34 3.4
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 34 3.4
UniRef50_A3GHR5 Cluster: Predicted protein; n=2; Saccharomycetac... 34 3.4
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 34 3.4
UniRef50_UPI00015B4152 Cluster: PREDICTED: hypothetical protein;... 34 4.6
UniRef50_A7EJZ6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_P13468 Cluster: DNA-binding protein K10; n=2; Sophophor... 33 8.0
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 87.4 bits (207), Expect = 3e-16
Identities = 44/52 (84%), Positives = 48/52 (92%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQDINDNKSQLVP 529
MAFT+LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ +N S+L+P
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ-VN---SKLIP 48
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +2
Query: 557 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 667
ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+
Sbjct: 11 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 72.9 bits (171), Expect = 8e-12
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +2
Query: 47 ANTIHRDAMAAPLVEIAISNFRHKLQLYPYQVNSKLM 157
ANTIHRDA+ APLVE AISNFRHKLQLYPYQVNSKL+
Sbjct: 11 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 64.5 bits (150), Expect = 3e-09
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 256 AITAPLVETAISNFRHRLQLYPYQVNSKLM*NLNPL 363
AITAPLVETAISNFRH+LQLYPYQVNSKL+ LN L
Sbjct: 18 AITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 53
Score = 33.1 bits (72), Expect = 8.0
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 212 FTNLVDTLANTIHR 253
FTNLVDTLANTIHR
Sbjct: 3 FTNLVDTLANTIHR 16
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 47.2 bits (107), Expect = 5e-04
Identities = 18/40 (45%), Positives = 31/40 (77%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF +D L++T HRD+I+APL+++++S + L+L+PY
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPY 40
Score = 41.1 bits (92), Expect = 0.030
Identities = 15/37 (40%), Positives = 29/37 (78%)
Frame = +2
Query: 557 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 667
++T HRD+I+APL+++++S + L+L+PY V +L+
Sbjct: 11 SSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 38.7 bits (86), Expect = 0.16
Identities = 14/37 (37%), Positives = 28/37 (75%)
Frame = +2
Query: 47 ANTIHRDAMAAPLVEIAISNFRHKLQLYPYQVNSKLM 157
++T HRD+++APL++ ++S + L+L+PY V +L+
Sbjct: 11 SSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 33.1 bits (72), Expect = 8.0
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +1
Query: 256 AITAPLVETAISNFRHRLQLYPYQVNSKLM*NLN 357
+I+APL+++++S + L+L+PY V +L+ LN
Sbjct: 18 SISAPLLDSSVSQLQSSLELFPYTVPKELVPQLN 51
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQDINDNKSQLVPGF 535
MAF + L++T+HRD + APL+E+ R L+LYP+ IN K L+ F
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWA-INAEKLDLLKKF 53
Score = 40.3 bits (90), Expect = 0.052
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +2
Query: 557 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 661
++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 11 SSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 39.9 bits (89), Expect = 0.069
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 47 ANTIHRDAMAAPLVEIAISNFRHKLQLYPYQVNSK 151
++T+HRD +AAPL+E R L+LYP+ +N++
Sbjct: 11 SSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = +2
Query: 359 PYSSSMAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
P S LV+ L T+HRD + +PLVE A R LQLYPY
Sbjct: 127 PALSGGGLKELVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPY 171
Score = 41.1 bits (92), Expect = 0.030
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 563 TIHRDAITAPLVETAISNFRHKLQLYPYQV 652
T+HRD + +PLVE A R LQLYPY +
Sbjct: 144 TVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 40.3 bits (90), Expect = 0.052
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 53 TIHRDAMAAPLVEIAISNFRHKLQLYPYQV 142
T+HRD + +PLVE A R LQLYPY +
Sbjct: 144 TVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 42.3 bits (95), Expect = 0.013
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +2
Query: 389 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
+++TL++TIHRD I APL+ET S +R L+ +P+
Sbjct: 27 VIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPW 61
Score = 37.5 bits (83), Expect = 0.37
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 557 ANTIHRDAITAPLVETAISNFRHKLQLYPYQV 652
++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 32 SSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 47 ANTIHRDAMAAPLVEIAISNFRHKLQLYPYQV 142
++TIHRD +AAPL+E S +R L+ +P+ V
Sbjct: 32 SSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 40.7 bits (91), Expect = 0.040
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF S ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 39.5 bits (88), Expect = 0.092
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Frame = +2
Query: 392 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQDINDNKSQL------VPGFCA*HGF 553
V++L T HRD ITAP+VE+ + R L+ YP+ + S L + GF H
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFG--HAA 71
Query: 554 HANTIHRDAITAPLVE 601
H + +H+ T L++
Sbjct: 72 HPHPVHKTIETHLLLD 87
Score = 36.3 bits (80), Expect = 0.85
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 563 TIHRDAITAPLVETAISNFRHKLQLYPYQV 652
T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 20 TTHRDTITAPIVESLATPLRRSLERYPWSI 49
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF +D LA T HRD P++E+ + + R +Q YP+
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPW 40
Score = 33.5 bits (73), Expect = 6.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 557 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 667
A T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 11 APTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
>UniRef50_Q16SQ5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 508
Score = 37.9 bits (84), Expect = 0.28
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 55 HPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*--HGFHQFSR 228
H + H P + +Q P + +T P K++ D ++ QL G A G H+ +
Sbjct: 199 HQQQLHQSEPQYQQMRQRPEETATPPPQLKYKWDDETDRHHQLASGSAASVVSGRHRINA 258
Query: 229 HSRQHHPPSAITAPLVETAIS 291
+R++H PS T P + S
Sbjct: 259 ETRRNHQPSFTTTPYAPPSTS 279
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 37.5 bits (83), Expect = 0.37
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF S ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
>UniRef50_UPI0000DD86C1 Cluster: PREDICTED: similar to double
homeobox, 4; n=12; Homo/Pan/Gorilla group|Rep:
PREDICTED: similar to double homeobox, 4 - Homo sapiens
Length = 210
Score = 35.5 bits (78), Expect = 1.5
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +1
Query: 430 NGSPSGNRHQQFPSQASTLPISGYKRQQKSACPWLLRLAWLSR--QHHPPRRHNGSPSGN 603
+G+PS H S L + Y +S P +RL+W R Q PP G
Sbjct: 48 HGNPSSGHHAGVASSLWVLALVSYLEMNESHTPACVRLSWQQRHPQALPPSLREGLEHSR 107
Query: 604 RHQQFPSQ-ASTLPISGKFQAHDINNQQSQL-VP-GF 705
++F S STLP S A D + QL VP GF
Sbjct: 108 LQRRFSSTLPSTLP-SRFLPAEDAWEPREQLPVPAGF 143
>UniRef50_A6SJW8 Cluster: Predicted protein; n=1; Botryotinia
fuckeliana B05.10|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 601
Score = 34.7 bits (76), Expect = 2.6
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 451 RHQQFPSQASTLPISGYKRQQKSACPWLLRLAWLSRQHHPPRRHNGSPSGNRHQQFPSQA 630
++ + P A LPI K+ S L+ L+ L HHPP+ N +P H+ SQ
Sbjct: 446 KNARSPLPAQLLPILDPKQPSTSPFNSLIELSLLRTIHHPPQAPNPTPQQYLHRLLSSQP 505
Query: 631 ST 636
T
Sbjct: 506 IT 507
>UniRef50_UPI000023F3F3 Cluster: hypothetical protein FG08939.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG08939.1
- Gibberella zeae PH-1
Length = 2643
Score = 34.3 bits (75), Expect = 3.4
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 70 HGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQFSRHSRQHHP 249
H PS + + + +T I G F+ N+QS ++P F A + H RQH
Sbjct: 2064 HKSQPSQGKTEADKDKLTTSKILGAFKRSSKENRQSMVIPDFQAYQQHQMGAPHQRQHPQ 2123
Query: 250 PSAITAPLVETAISN 294
T E A S+
Sbjct: 2124 QHTTTQAPYEQAQSS 2138
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 34.3 bits (75), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 47 ANTIHRDAMAAPLVEIAISNFRHKLQLYPYQVNSKL 154
A T HRD +A PL+E +R L YP+ + + L
Sbjct: 99 APTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
Score = 34.3 bits (75), Expect = 3.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 557 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 664
A T HRD I PL+E +R L YP+ + + L
Sbjct: 99 APTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
Score = 33.9 bits (74), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 398 TLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
+LA T HRD I PL+E +R L YP+
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPW 128
>UniRef50_A3GHR5 Cluster: Predicted protein; n=2;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 987
Score = 34.3 bits (75), Expect = 3.4
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Frame = +1
Query: 439 PSGNRHQQFPSQASTLPISGYKRQQKSACPWLLRLAWLSRQHHPP-----RRHNGSPSGN 603
P N++QQ+P Q ++ Q+ P +QH PP ++H SP
Sbjct: 850 PKPNQYQQYPPQQQQFRTQTQQQPQQQYRPQQ------QQQHRPPPPPQQQQHRPSPPPQ 903
Query: 604 RHQ---QFPSQASTLPISGKFQAHDINNQQSQLVPGF 705
+ Q Q+ Q P+ G + QQ Q VPGF
Sbjct: 904 QQQPQQQYRPQPQQQPLLGHAHPYARQAQQQQHVPGF 940
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 374 MAFTSLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF +D LA+T H+D P++E+ + LQ YP+
Sbjct: 1 MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPW 40
>UniRef50_UPI00015B4152 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 246
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 550 LSRQHHPPRRHNGSP-SGNRHQQFPSQASTLPISGKFQAHDINNQQSQ 690
L + HH ++H GN+ QQ P Q + I + + +D+N+ Q Q
Sbjct: 22 LQQHHHQQQQHQDCDYRGNKKQQQPQQVESQMIGNQCEINDVNHMQQQ 69
Score = 33.1 bits (72), Expect = 8.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 40 LSRQHHPPRRHGGSP-SGNRHQQFPSQASTLPISGKFQAHDINNQQSQ 180
L + HH ++H GN+ QQ P Q + I + + +D+N+ Q Q
Sbjct: 22 LQQHHHQQQQHQDCDYRGNKKQQQPQQVESQMIGNQCEINDVNHMQQQ 69
>UniRef50_A7EJZ6 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 695
Score = 33.1 bits (72), Expect = 8.0
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Frame = +1
Query: 55 HPPR--RHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQFSR 228
H P H G Q F Q + L + KF+A N + + A H SR
Sbjct: 507 HTPNASNHNSYNQGGYAQSFNHQPANLALESKFRAPGKNASHAMITNLSIATHPRLNVSR 566
Query: 229 HSRQHHPPSA-ITAPLVETAISNFRHRLQLYP 321
H PPSA +T + + + + LQ+ P
Sbjct: 567 HFHMDLPPSATLTQQSITINLPSTHYYLQIKP 598
>UniRef50_P13468 Cluster: DNA-binding protein K10; n=2;
Sophophora|Rep: DNA-binding protein K10 - Drosophila
melanogaster (Fruit fly)
Length = 463
Score = 33.1 bits (72), Expect = 8.0
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = +1
Query: 487 PISGYKRQQKSACPWLLRLAWLSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAH 666
P G+K Q + P + + +Q HP PS N+ QQ PS S Q H
Sbjct: 105 PPPGFKHNQVGS-PKKKSMKGIKQQQHPSPNQQQPPSPNQ-QQHPSPNQQQHPSPNQQQH 162
Query: 667 DINNQQSQLVP 699
+NQQ L P
Sbjct: 163 PNSNQQQHLSP 173
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,280,028
Number of Sequences: 1657284
Number of extensions: 18056655
Number of successful extensions: 47968
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47903
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -