Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120273.Seq
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 37 0.016
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 30 2.4
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 5.4
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 28 7.2
08_02_0335 - 15880426-15880509,15881344-15881444,15882310-158823... 28 7.2
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 28 7.2
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 28 7.2
08_02_0795 + 21273453-21273752 28 9.5
02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989 28 9.5
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/68 (35%), Positives = 28/68 (41%)
Frame = -2
Query: 638 KVEACDGNC*WRFPLGEPLWRLGGWCWRESHAKRRSQGQADFCCRLYPDMGKVEACDGNC 459
KV GNC W P + R W E H R G D C Y GK + DGNC
Sbjct: 1124 KVYKSGGNCNWVLPQYVCVMRACRLYWAEVHC-RNVLGFTDSSCYHYAPKGKQKLKDGNC 1182
Query: 458 *WRFPLGE 435
R+ + E
Sbjct: 1183 VARYGIVE 1190
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/72 (29%), Positives = 25/72 (34%)
Frame = +1
Query: 43 SRQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQF 222
S H +RH P G+ HQ S G FQ+ Q + P
Sbjct: 72 SSGHRESQRHHQQPPGS-HQHHRRSGSVASDPGDFQSKFAPPPQFRPSPSPSQYDHHSSD 130
Query: 223 SRHSRQHHPPSA 258
RH HHPP A
Sbjct: 131 HRHGHGHHPPHA 142
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = +1
Query: 436 SPSGNRHQQFPSQASTLPISGYKRQQKSACPWLLRLAWLSRQHHPPRRHNGSPSGNRHQQ 615
+PS RH PS+ PI +R+ S P LR S +H PRR GSP R
Sbjct: 294 APSPIRHGGTPSRRPGSPI---RRRSPSPPPRRLR----SPRHLSPRRDRGSPI-RRRSP 345
Query: 616 FPSQASTLP 642
P + T P
Sbjct: 346 LPRRRLTPP 354
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 556 RQHHP-PRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCVSMAFTNL 732
R H P P R S S N +QQ + ++ + Q + + QQ+QL ++
Sbjct: 549 RGHGPKPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQNQLESQQKQLDWLRSV 608
Query: 733 VGTLATHPPRAI 768
V LA PP A+
Sbjct: 609 VSKLAGIPPPAM 620
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 46 RQHHP-PRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 183
R H P P R S S N +QQ + ++ + Q + + QQ+QL
Sbjct: 549 RGHGPKPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQNQL 595
>08_02_0335 -
15880426-15880509,15881344-15881444,15882310-15882396,
15882495-15882510
Length = 95
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 58 PPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPG-FCA*HGFHQF-SRH 231
PP+ GGS + RH + + LP S F NNQQ G +GF F ++H
Sbjct: 12 PPQ--GGSGASKRHADIHHEVTNLPGSKGFTPSRNNNQQPYNGQGAHSLTYGFKTFATKH 69
Query: 232 SRQH 243
R++
Sbjct: 70 PRKY 73
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 566 WCWRESHAKRRSQGQADFCCRLYPDMGKVEACD 468
+ WR + KR+ + D+ C + D G++ CD
Sbjct: 395 YVWRGARVKRKWEEDDDYVCSVCHDCGELLMCD 427
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 556 RQHHPPRRHNGSPSGNRHQQFPSQA 630
R H PP H PS Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202
>08_02_0795 + 21273453-21273752
Length = 99
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 284 AVSTRGAVMALGGWCWREC 228
A T A A GGW WR+C
Sbjct: 67 ACDTAAAAAAAGGWEWRDC 85
>02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989
Length = 246
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 64 RRHGGSPSGNRHQQFPSQAS 123
RRHGGS SGNR P A+
Sbjct: 42 RRHGGSGSGNRGTTLPRAAT 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,276,622
Number of Sequences: 37544
Number of extensions: 531164
Number of successful extensions: 1509
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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