Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120273.Seq
         (777 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    28   0.28 
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    26   1.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.6  
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    25   2.6  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   6.0  

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +1

Query: 556 RQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP 699
           +QHH    H   P     QQ+ S     P+  K + HD      +L P
Sbjct: 309 QQHH---HHQHQPQQQHQQQYHSHPHHTPVQFKTELHDNTQYDEELSP 353



 Score = 27.5 bits (58), Expect = 0.49
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +1

Query: 46  RQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP 189
           +QHH    H   P     QQ+ S     P+  K + HD      +L P
Sbjct: 309 QQHH---HHQHQPQQQHQQQYHSHPHHTPVQFKTELHDNTQYDEELSP 353


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 40  LSRQHHPPRRHGGSPSGNRHQQFPSQASTLP 132
           L+ QHH    H G PSG    +  S    LP
Sbjct: 58  LASQHHALSHHAGEPSGGGGGRAGSDEDELP 88



 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 550 LSRQHHPPRRHNGSPSGNRHQQFPSQASTLP 642
           L+ QHH    H G PSG    +  S    LP
Sbjct: 58  LASQHHALSHHAGEPSGGGGGRAGSDEDELP 88


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 541 LAWLSRQHHPPRRHNGSPSGNRHQQFPSQASTL 639
           LAW   Q + P+  N   + + HQQ  +Q   L
Sbjct: 406 LAWFGEQRNRPKDRNQPATLHHHQQVHNQQRIL 438


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 619 PSQASTLPISGKFQAHDINNQQSQLVPG-FCVSMAFTNLVGT 741
           P  AST P  G FQ+   NN  S ++PG + +++  TN V T
Sbjct: 10  PGAASTTPSPGAFQSLARNN--SYVIPGLYDLNVEDTNWVLT 49



 Score = 24.2 bits (50), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 109 PSQASTLPISGKFQAHDINNQQSQLVPG 192
           P  AST P  G FQ+   NN  S ++PG
Sbjct: 10  PGAASTTPSPGAFQSLARNN--SYVIPG 35


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 290  AISVTGFNFTHIR*IPSSCKILIPYSSSMAFTSLVDTLANTIHRDAITAPLVETA 454
            ++ +  F   H++    S  I+  YS       L   LAN +HR+A ++  ++ A
Sbjct: 1073 SMPIQAFEMIHLKTYQGS--IIQKYSRLSCILELDTMLANHLHREAFSSSELQKA 1125


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,452
Number of Sequences: 2352
Number of extensions: 17457
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)