Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.99 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   7.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   7.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 371  WKTAFQATKCWTTSIWNMTTALILTFTMNTNRPRIGAT*LYPTR-KLAPKPA 523
            W ++   +  WTT+    TT    T T  T RP    T  +PT+    P PA
Sbjct: 1042 WWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRP---TTTNWPTQGTTIPPPA 1090


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 689 FGQNAEANSKTNAKEQTP 742
           FG+N EA++ +N    TP
Sbjct: 143 FGENEEADAASNVISSTP 160


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/48 (25%), Positives = 18/48 (37%)
 Frame = +2

Query: 671 IRRRSSFGQNAEANSKTNAKEQTPHFQHGYSDDTLLTEMKN*CNFIQP 814
           IRR    G    A       +  P + +G     +L  +   CN I+P
Sbjct: 418 IRRVQQLGILRYAKGPYQPSQAPPTYDYGIPQGVVLNPLDARCNEIRP 465


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 540 FLDTVTTNNVSSKYEEYIDCIVSN 611
           ++D V  NN     ++YI  +V+N
Sbjct: 230 YIDEVFNNNFGYDKKQYIGVVVAN 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,090
Number of Sequences: 336
Number of extensions: 3498
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)