Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    29   0.62 
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    28   1.9  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   4.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   5.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   7.6  

>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 89  FTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNI 220
           +T +++   L+FER   +R   D+  V V KF+F S LQE+ ++
Sbjct: 264 YTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVS-LQEVGDV 306


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 265 NVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFD 444
           N  ++ ++ S  +  + E   Q L  L   FIT S+ DSI   E +   D   ++G DF+
Sbjct: 566 NHEKLMESESDRLSKKWENP-QLLAQLKSRFITGSLLDSIEGQEEVSQDD---EEG-DFE 620

Query: 445 VYDEYEPSS 471
             ++ E SS
Sbjct: 621 DLEDEENSS 629


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 510 LQNPPKDRVMFLDTVTTNNVSSKYEEYI 593
           LQ+PPK+R++F D   T      +E YI
Sbjct: 241 LQSPPKNRIVFCDGCNTPFHQLCHEPYI 268


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 80  RITFTPIEDSAGLVFERMYGLRHHTDER 163
           RI F P+ED + +VF ++   ++  DE+
Sbjct: 290 RIVFRPVEDHSHIVFAQLTHYKNKKDEK 317


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 268  VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 435
            +R++K+N  S +  +IEK++       +  +  ++   IS  E+L+   L  DD V
Sbjct: 1069 LRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTV 1124


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 368 LW-KTAFQATKCWTTSIWNMTTALI 439
           LW + A   TK W T IWN    L+
Sbjct: 666 LWNENAIMGTKRWLTKIWNCVHQLL 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,092
Number of Sequences: 5004
Number of extensions: 58668
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)