Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935...    31   1.5  
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923...    28   8.1  

>12_01_0945 +
           9351915-9351929,9352221-9352386,9352903-9353024,
           9353098-9353214,9356997-9357077,9357204-9357272,
           9357727-9357790,9357988-9358067,9358164-9358247,
           9358418-9358502,9359658-9359743,9359924-9360045,
           9360841-9360901,9360981-9361166,9363622-9363723,
           9363803-9363844,9363949-9364086
          Length = 539

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 546 PKTLLGLWAGFGASFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQHFV 391
           P+T LGL+   GAS+ +  S +    G +V +  V+++A  +    +  HFV
Sbjct: 271 PETALGLFPDIGASYFL--SRLLGFYGEYVGLTGVRLDAAEMLACGLATHFV 320


>03_02_1025 +
           13289146-13289586,13291882-13292087,13292174-13292323,
           13292412-13292545,13292843-13292949,13293031-13293137,
           13293581-13293686,13294098-13294217,13294318-13294474,
           13295163-13295254,13295338-13295582,13295668-13296268,
           13296362-13296457,13296541-13296794,13297622-13297715,
           13299138-13299188
          Length = 986

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 292 SSNIKTRIEKQ-LQFL-TPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEP 465
           SSN K  +E++ LQF  TP N     + V   ++   +L  +D E DD V   +    E 
Sbjct: 513 SSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTIL--VDTENDDSVSAVIQQAIEK 570

Query: 466 SSHW 477
           +++W
Sbjct: 571 TNYW 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,866,548
Number of Sequences: 37544
Number of extensions: 361685
Number of successful extensions: 978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)