Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10211| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4)             29   6.2  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_10211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 365 YVMKFLLSGVKNCSCFSMRVLMLLDLFCFICLTFLQVKLALHII 234
           Y++KF LS +K     S R  M L +   +CL +  +  AL ++
Sbjct: 5   YIIKFSLSTIKFFEDRSSRAFMALSIIHMVCLAWFTMDFALRVV 48


>SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4)
          Length = 153

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 403 DNIDLEYDDGVDFDVYDEYE-PSSHWSNMTVSDAKACSK 516
           D +D +YDD  ++D YDEY+     W +      KA ++
Sbjct: 87  DVLDDDYDDYDEYDEYDEYDRVRVEWDSFESDSVKAITE 125


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 365  YVMKFLLSGVKNCSCFSMRVLMLLDLFCFICLTFLQVKLALHII 234
            Y++KF LS +K     S    M L +   +CL +  +  AL ++
Sbjct: 1741 YIIKFSLSTLKFFEDRSSHAFMALSIIHMVCLAWFTMDFALRVV 1784


>SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 418 EYDDGVDFDVYDEYEPSSHWSNMTVSD 498
           +YDD  D+D YD+Y+P   + +    D
Sbjct: 324 DYDDYDDYDDYDDYDPDDIYDDYEAYD 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,753,739
Number of Sequences: 59808
Number of extensions: 459893
Number of successful extensions: 1229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)